Rhodamnia argentea (silver malletwood): 115754130
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Entry
115754130 CDS
T10595
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115754130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115754130
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115754130
mRNA degradation factors
5'-3' decay
Decapping complex
115754130
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40
Beta-prop_THOC3
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_EDC4L
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_TEP1_C
PEP5_VPS11_N
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
pAdhesive_17
Motif
Other DBs
NCBI-GeneID:
115754130
NCBI-ProteinID:
XP_030548929
UniProt:
A0A8B8QP27
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All DBs
Position
2:complement(10839406..10851723)
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AA seq
1357 aa
AA seq
DB search
MASPGNPNQPSSPPPPFDMAKFFMPPASPSQAQAHISYPPPPSSSSSYPLPTVGPGHFPY
SPPQTSPFNHQEHLLSQRSLSYPTPLLHPPNPNAGAHLMALLSSLPQPSLGPSELPTPSS
VLAPGGPARMPSSKAPRGRHLVGDCVVYDVDVRLAGEVQPQLEVTPITKYTSDPQLVLGR
QIAVNQSYICYGLKQGNIRVLNMNTASRSLLRGHTQRITDMVFFAEDVHLLASASTDGRI
YVWKVSESLEEDNKQQITGNIIIAIQLTQEESVHPRVCWHCHKQEILVVGIGEHVLRIDT
TKVGKGEVYSAEEPLMCPIDTLIEGVQLVGKHDGEVTDLSMCQWMTSRLVSSSVDGTIKI
WEDRKTLPLAVLRPYDGHPVSSAAFVTSSHRPDHIILITAGPLNRELKVWASASEEGWLL
PSDDELWKCTQTLDLRSSSEPHVQDAFFNQVLVLPQAGLLLIANAKKNAIYAVHLEYGPN
PTSTRMDYLAEFTVTMPILSFTGVSDISPYGVHVIQVYCVQTQAIQQYALDLFLCLPPLL
EKVGLEKSDPDVPCDVMNVEGPTAADASVIKPTEFPSAASAPKITERTSSPDVTETIRFP
ISSASVEMAAPQAVTPLDEDSQTVNVAPPTSQSDIHVVASAPPLPLSPRLSRKLSGFRSP
SGGSDSGLPFNDHYGNGQVMNSSADRQVETVPAQMADVNPMKDESRNDEKRVSQDNASTM
LNRPVVFKHPTHLITPSEILRAVSSSETSFLGGKSEEEANTPDVVVSSDAANTPEEIRVV
ADTGFTKEDEFSPEERTRDFVAENRERIFSSQISDLGMEVARECRELSESLAEANPVANS
RLMEPPGQSPSADVEEIHDSSKYVCEKILEPGMAATVLPGPISSVKSKKQKERNSQASGR
SSSSPSASNSTDSYNEAIASSSLPSMEAAFPHIVAMEEKLNQLMNMQKEMKKQMTATVNV
PITKEGRRLEASLGRSMEKTVKANNDAFWARFHEESFKNEKLAQDRMQQITNLLNNLMNR
DMPAILDKIVKKELATVQASVVRAIMPAVEKTVSSALSESFQRGVGDKAVSQLEKSVNSK
LEATVARQILAQFQTSGRQAIQDALKSTLEASVIPAFEMSCKAMFEQVDTTFQKGIIEHT
SAAQQHLESVHSPLALALKDAINSALSMTLTLSGDLADAQRKLLALAVAGANSPVSPLVT
ELSNGPLGGPQEKVDKPFDPTKELLRVISEHKYEEAFTLALQRSDVSTVAWLCSQVDLHR
ILTIAPLPLSQGVLLSLLQQLACDINKDMPRKLSWMTDVAGAINPSDPVIAVHVRPIFEQ
VYRILSHQRTLPTNASPELSSIRLLMHVINSMLMTSS
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttccccgggaaaccctaaccagccatcatctcctcctccccccttcgacatggcc
aaattcttcatgccgcccgcctcgccgtcgcaggctcaagcccacatttcttatcctccg
ccgccttcctcctcctcctcgtatcctctgcccaccgtcggccccggccactttccttac
tctccccctcagacctctcccttcaaccaccaagagcatctcctctctcagcgctctctt
tcttaccctaccccacttctccatcccccgaaccctaacgccggagcccacctcatggcc
ttgctaagttcgttgccgcaaccatccttgggcccatccgagctccccacgccaagctca
gtcttggccccgggggggcctgctcgcatgccgagcagtaaggccccgagggggcggcat
ttggtgggggattgtgtggtgtatgacgtggatgtaaggttggctggcgaggtgcagccg
cagttggaggtcacgccaatcacgaagtacacttcggacccccagctcgtgttggggcgg
cagattgcggtgaaccagtcatatatatgctatggtttgaagcaagggaacataagggtg
cttaatatgaatactgcctctcggtctttgctccggggtcacacacagaggatcacagac
atggttttctttgcagaggatgttcaccttttggccagtgcaagcacagatggaaggatt
tatgtgtggaaagtctctgaaagcctagaggaggataataagcaacagattactggaaac
atcatcattgccattcaactaacacaagaggagtctgtccatccacgagtttgttggcat
tgtcacaaacaggaaattctggtggttggaataggagaacatgttttgagaattgatacg
actaaagtggggaagggtgaagtttattcagcagaggaacctctcatgtgtcctattgat
actctcattgaaggggttcaattagttggaaaacatgatggagaagtgaccgatttgtca
atgtgccagtggatgacctctcgtttggtttcctcttctgtcgatggcacgataaagatt
tgggaagatcgtaaaacattgccacttgctgttctgagaccgtatgatggccatcctgtt
agttctgctgcatttgtgacttcttcccatcggccagaccacataatacttataacagcg
ggtccattaaatcgtgaactcaaggtttgggcttcagcaagcgaagaaggttggcttttg
ccaagtgatgatgaattatggaagtgcacacagacgttggacctcaggagttcatctgaa
ccgcatgttcaggatgcgttcttcaatcaagttcttgtattacctcaagctggtcttctt
ttgattgcaaatgctaagaagaatgctatctatgctgtgcacttagaatatggtcccaat
ccaacaagtactcgcatggactacttggcagagtttaccgtaacaatgcccatactgagt
tttaccggggtaagtgacatatcaccatatggggtacatgtaattcaggtttactgtgtc
cagacgcaggctattcagcagtatgccttggacttatttttgtgcctaccaccacttttg
gagaaggtgggattagagaagtctgatcctgatgtgccatgtgatgtgatgaatgttgaa
ggaccaacagctgcagatgcttccgtaatcaaacctactgaatttccatcagctgcttca
gcacctaaaataaccgagagaacaagcagccctgatgttacagagactatcaggttcccc
ataagctctgcttctgttgagatggccgctccacaagcagttacacccttggatgaagat
tctcaaaccgttaatgtggcacctccaactagtcaatctgatattcacgtcgttgcatct
gcccctcctcttcctttaagtcctaggttgtctcgaaaactttctggttttagaagtcca
tcaggtggttctgattctggtcttccttttaatgatcactatggcaacggacaagtcatg
aattcttctgcagataggcaagtggaaactgtccctgcacagatggcagatgtaaatccg
atgaaggatgagtcgaggaatgatgaaaagagagtttcgcaagataatgcatccaccatg
cttaaccgtcctgttgtgttcaaacatcctactcacttaattactccctctgaaatatta
agggctgtttcatcctctgaaactagttttcttggaggcaagagtgaggaagaggcaaat
actccagatgtggttgttagtagtgacgcagctaatacaccagaggagatcagagttgta
gcagatacaggatttacaaaggaagatgaattttctcctgaggagcggactagggatttt
gttgcagagaacagagagagaatttttagttctcaaatttcagatcttggaatggaggtg
gccagggaatgccgtgaattatcagaaagcttggcagaagctaatccagttgccaatagt
agattgatggagccacctggtcaatccccttctgctgatgtggaagaaatccatgactca
tcaaaatatgtatgtgaaaagattttggagccaggtatggccgcaacagtcttgccaggc
ccaatatcaagtgtgaaaagtaaaaagcagaaggagagaaattcccaagcctcaggtcga
tcttcatcttccccaagtgcttccaattcaacagattcttacaatgaagctatcgcaagt
tcaagtcttccatcaatggaagctgcttttcctcacattgtcgcaatggaagagaaactt
aatcagctgatgaacatgcaaaaagaaatgaagaagcaaatgactgctactgttaacgtg
ccgatcaccaaagaaggcagaaggctggaggcttccctagggcgttccatggagaaaact
gtcaaggctaataatgatgccttttgggctcggtttcatgaagagagtttcaaaaatgag
aaattggcacaggaccgtatgcagcaaataacaaatttgcttaataacttaatgaacagg
gatatgccagccattctggacaaaattgtgaaaaaggaattggctactgttcaagcatct
gtagttcgtgccatcatgccagctgttgagaagacagtatcttcagctctttcagagtcc
ttccagagaggagttggtgataaagctgttagtcaactagagaaatcggttaattcaaaa
cttgaagccacagtcgcccgacaaatcctggcacagttccaaacttctggcaggcaagct
attcaggatgcattaaagtctactttggaagcttcggtgatccctgcttttgagatgtct
tgtaaagctatgtttgagcaagtagatactacattccagaaaggaatcattgaacacact
tctgcagctcagcagcatttagaatctgttcattctccattggcacttgctttaaaggat
gccattaattcagcattgtcaatgacgctgaccttgagtggagatctggctgatgctcaa
cggaagcttttagctcttgccgtagctggagctaactcacctgtaagcccattggttaca
gaattaagcaacgggccattaggtggtccacaggaaaaggttgacaagccatttgatcca
acaaaagagctgttgagagtaatatctgaacacaaatatgaggaagctttcaccttggcc
ctgcaaagaagtgatgtgtccactgtagcttggttatgttctcaggtcgatctacatagg
atcttgacaatcgcacctctcccattaagccaaggagtactactgtctctcttgcagcag
ttggcgtgcgacatcaacaaagacatgccccggaagctgtcatggatgacagatgtggcc
ggtgccattaacccgtcagacccggtaatcgcggtgcatgtgcggcccatcttcgagcaa
gtttaccgaatactgagccatcaacgtactctgccgaccaatgccagtcccgagctttct
agcatacgccttctcatgcatgtcattaactccatgctgatgacctctagttga
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