KEGG   Rhodamnia argentea (silver malletwood): 115754149
Entry
115754149         CDS       T10595                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
rarg  Rhodamnia argentea (silver malletwood)
Pathway
rarg03013  Nucleocytoplasmic transport
rarg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rarg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115754149
  09122 Translation
   03013 Nucleocytoplasmic transport
    115754149
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rarg03019]
    115754149
   03041 Spliceosome [BR:rarg03041]
    115754149
Messenger RNA biogenesis [BR:rarg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     115754149
Spliceosome [BR:rarg03041]
 Complex C
  Other components
   EJC/TREX
    115754149
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    115754149
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I WDR55 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML eIF2A Beta-prop_WDR35_TULP_N Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_HPS5 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_DCAF12 Tricorn_2nd WDR90_beta-prop_4th Beta-prop_IFT80_2nd Beta-prop_WDR41 Beta-prop_Nup120_160 Beta-prop_ACSF4 DUF7099 WD_LRWD1 CNH Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 115754149
NCBI-ProteinID: XP_030548969
UniProt: A0A8B8QP62
LinkDB
Position
2:10687878..10692072
AA seq 314 aa
MEEAAIPFKNLHSREYQGHKKKVHSVAWNCSGTKLASGSVDQTARVWHIEPHGHGKVKDI
ELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG
THVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMSGEMFFLTTGNGTVEVLAYPS
LRPMDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS
FNHTGDYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ
ADEGVFRIFGFESA
NT seq 945 nt   +upstreamnt  +downstreamnt
atggaggaggcggcgatccccttcaagaatctccatagcagagagtatcaaggtcacaag
aagaaggtgcattcggtggcttggaactgctcgggaacgaagctcgcgtccggctccgtc
gatcaaacggctcgggtttggcacatcgagccgcacggtcacggtaaggtcaaagatatt
gaattgaaagggcacactgacagcgtggatcagctatgttgggatccgaagcatgcggat
ttaattgcaacagcatcaggcgacaagactgtacggctgtgggatgcacggagtggtaaa
tgctcacagcaagcagaactcagtggggaaaacatcaacataacttacaaacctgatgga
acacacgtagcagttggtaatagggatgatgagctaacgattttggatgttcggaagttt
aagccaattcacaagcgtaagttcaattatgaggtgaatgaaatagcgtggaacatgtca
ggagagatgttctttttgacaacaggaaatggtactgtggaagtattagcatacccatct
cttcgacctatggacacccttatggctcatactgctggctgctattgtatcgcaattgac
ccaattggaaggtattttgctgttggaagtgcagattccttggtgagcctgtgggatatc
tctgagatgctctgtgtgaggacttttacaaaacttgaatggcctgtaaggacgataagc
ttcaatcacactggagactacattgcttctgccagtgaagatctgttcattgacatttca
aatgttcaaactggacggacagtgcaccaaattccatgccgagctgcgatgaacagtgtg
gaatggaatccaaaatacaatttacttgcatatgctggggatgacaaaaacaagtatcag
gcagatgaaggtgttttccggatatttggatttgagagcgcatga

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