Rhodamnia argentea (silver malletwood): 115755174
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Entry
115755174 CDS
T10595
Name
(RefSeq) exosome complex component RRP42-like isoform X1
KO
K12589
exosome complex component RRP42
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115755174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115755174
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115755174
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
115755174
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
115755174
NCBI-ProteinID:
XP_030550354
UniProt:
A0A8B8QVL6
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Position
5:complement(5441843..5446083)
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AA seq
311 aa
AA seq
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MNGLSLGEKLFIQGGIAQDLRSDGRKRLTYRPIYVETGIIPQANGSARVRMGGTDVIASV
KAEIGRPSPVQPNKGKVSIYVDCSPTAAPMFEGRGAEELSTEVSVTLQRCLLGGKSGAGA
GIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALSAAIKAALSNTGIPRVHVAAEASGE
DQPELEISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESETSSAVSVSINRKGLIC
GLTKRGGAGLDPSVILDMISVAKHVSEQLMDRLDSEISASTITCSIRQCHMWLGNVFKLL
SSPATQIEEGM
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggttatctcttggagaaaagctattcatacaaggaggcattgcacaagacctt
cgctctgatggccgtaaacgactaacttaccgacccatatatgtcgaaaccggcattatt
ccacaggccaatggctcggccagagttagaatgggtggaactgatgtcatcgccagtgtg
aaggccgaaattggaagaccaagtccagtacaacccaacaaagggaaggtttccatatat
gttgattgcagcccaactgccgctccaatgtttgagggtagaggggccgaggagttgtca
acagaagtgtcagttactctccagcgatgtcttttgggtgggaaaagtggagcaggtgct
ggaattgatttgtcatctctgatcgttgtggaaggaaaagtctgttgggatctgtatatc
gatggtcttgttgtcagttcagatgggaatctcctagatgctcttagtgctgccatcaag
gctgctctgagcaacacaggcatccccagagttcatgtcgcagcggaagcatccggtgag
gatcaaccagaacttgaaatcagtgacgaagaattcttacaatttgacacatctggagtt
cctgttattgttacattaacaaaggtgggcaggcattatattgtagatgcgacttcggag
gaggaatcagagacgagctctgctgtttctgtttccatcaacaggaaagggttaatatgc
ggtcttaccaagcggggaggtgcaggtttggatccaagtgtcatcctcgatatgatatct
gtggctaagcatgtaagcgaacagctaatggatcggttagattccgagatatccgcctcc
acaattacctgtagcataaggcagtgtcatatgtggctgggaaatgtcttcaaattgttg
tcctcaccggctactcagattgaagaaggcatgtaa
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