Rhodamnia argentea (silver malletwood): 115755563
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Entry
115755563 CDS
T10595
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03013
Nucleocytoplasmic transport
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115755563
09122 Translation
03013 Nucleocytoplasmic transport
115755563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115755563
03041 Spliceosome [BR:
rarg03041
]
115755563
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
115755563
Spliceosome [BR:
rarg03041
]
Complex C
Other components
EJC/TREX
115755563
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115755563
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
Mua
Motif
Other DBs
NCBI-GeneID:
115755563
NCBI-ProteinID:
XP_030550881
UniProt:
A0A8B8QUK5
LinkDB
All DBs
Position
6:complement(28489574..28519897)
Genome browser
AA seq
1854 aa
AA seq
DB search
MSLPSVECVYVTEDLVREWKSATGSSIPKPPDPAPALRFLYELCWTMVRGELPFQKCKPV
LDSVEFLDGPTKEELGSGFADIISQMALDLTLPGEFRARLTKLAKWLVDCSLVPLRLFQE
RCEEEFLWEAELIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTQLCQVSD
ASSDSAKAATIGVIKSLIGHFDLDPNRVFDIVLECYELQSDATIFLDLIPIFPKSHASQI
LGFKFQYYQRLDVKSPVPFGLYKLTALLVREDFIDLDSVCAHLLPKDEEAFEQHNAFSVK
RLDEANKIGRINLAATGKDLMEDEKQGDVTIDLFASLDMESEAVAEHFTELENNQTLGLL
CGFLSVDDWCHAYTLLDRLSPLNPVAHLPICNGLFRIIEMTMTPAYNIVRQTHTLASSSA
AGVDTMSATESAHTSFVDLPKELFQMLACAGPYLYRDTILLQKVCRVLRGYYLSALELVE
GGDKVSNREFLPGQNKVPRMHLKEARLRVEEALGTCLLPSLQLVPANPAVGQEIWEVMCL
LPYEVRYRLYGEWEKDDERTPMILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHAN
PMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGREKLKDDGINL
SDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKRGQGIELVLLQELIQQMANVQYTEN
LTEEQLDAMAGGETLRYQVTSFGVTRNNKALVKSTNRLRDSLLPKDEPKLAIPLLLLIAQ
HRSVVVIKAEAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPATAYAQLIPSLNDLVHLYH
LDPEVAFLIYRPVMRLFKAHGSSEVCWPLDDDETMDLEAESEEKSCNLVLDLGRQKKPIM
WSDLLGTVKSMLPAKAWNSLSPDLYATFWGLTLYDLYVPKSRYDSEIAKQHAALKALEEL
SDNSSSAITKRKKEKEKIQESLDRLTSELHKHEEHVASVRRRLSCEKDKWLSSCPDTLKI
NMEFLQRCIFPRCTFSMSDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCT
EYEVGRLGRFLYETLKTAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHW
KWSQRITRLLIQCLESTEYMEIRNALIMLTKISGVFPVTRKSGINLEKRVAKIKSDERED
LKVLATGVAAAMAARKPSWVTDEEFGMGYLEVKPPSLASKSVSTNLAASNGPALAQNEHI
GGRGAQTDVGNSVKEQALRTKNAERGTEKTDTASGGKTDTGNLKVKGGSAANGSEAQITT
LPAVAQSGSHQRYVEESATKFDESITKAAPKDSTDSELKAPAKRSIAAASLAKPTKQDGK
DEKSGKIAGKSSASTNDRNVSAHTSEGRQVAAMNVSTTLTTNGNAKGSTPSTRSSIDVHG
VEAKMESAAAKSSDGRSSHVKDDGNDNYDAPKPPSRLVHSPRHESSLASSKSGDKLQKRS
SPPDEADRVSKRRKGDSDSRDLEGDVRYSDRERSADARFLDIERTGSDEHSIYRNTDKIS
DRTKERVVDRYDRDYRERPRGDDVVVERARDRSMERYVRERSVDKVQERSNDRSFDRLPE
KDRGKDDRSKLKYGETASEKVHVDDRFHGQSLPPPPPLPPHVVPQSVSSGRRDEDSDRRF
GVTRHTQRLSPRHDERERRRSEENITSQDDAKRKKEDDFRDRKREEREGMSLKVDERDRD
RDKANLLKEEMDANAASKRRKLKREHLPSGEPGEFSPVGPPTAPAISTSQSYDSRDRGER
KALMTQRPGYMEEPGTRMKEAASKMGRRDADPMYEREWDDEKRQRAEQKRRHRK
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccatccgtggagtgcgtgtacgtcaccgaggacctcgtccgcgaatggaag
tccgccaccggaagctccatccccaagcctcccgaccctgctcccgcgcttcgcttcctc
tacgagctctgctggaccatggttcggggagagctgccatttcagaagtgtaagccggtg
ttagactcggtggagttcttggatggaccgaccaaggaggagctgggttcaggcttcgca
gacatcatcagtcaaatggctcttgaccttacactgcctggggagtttcgtgctcgcttg
acaaaattggctaaatggctagtagactgttcgttggttccgcttagacttttccaggaa
cgttgtgaggaagaatttctttgggaagctgaactgatcaagataaaagctcaagaatta
aaaaacaaagaggtccgagtcaatacacgtctactttatcagcaaacaaagtttaacctt
ctccgtgaggagagcgagggctatgccaaactggtgacccaactttgtcaagtttctgat
gcttcaagcgacagtgcaaaagcagctacaataggcgttattaagtcattgattgggcac
tttgatttggacccaaatcgtgtttttgacattgtcttggagtgctacgaacttcagtct
gatgcaactatatttttggacctcattcctatttttccgaagtcacatgcttcacagatc
cttgggtttaagttccagtattaccagagactggatgtaaaaagtcctgtaccatttggg
ctctacaagcttacagctttgttggtgagggaagatttcattgatctcgacagtgtatgt
gcacatttactaccgaaggatgaggaagcatttgagcaacacaacgcgttttctgtcaag
cgacttgatgaggctaataaaattggtagaataaaccttgctgctactggaaaggatctt
atggaggatgagaaacaaggggacgtgacaatagatctttttgcttctttggacatggaa
tctgaagcagtagcggagcattttacagaactggaaaacaaccaaactttgggcttgctt
tgtggtttcctttctgtggatgactggtgccatgcctacactctacttgatcgattgtca
ccccttaatcccgtggcacatctccccatctgcaacggcttatttaggatcattgagatg
acgatgactccggcatataatattgttcggcaaacacatactctagcgtcttcctctgct
gctggtgtggataccatgagtgctacagagtcggctcatacttcctttgtcgatcttcct
aaagaactttttcagatgcttgcttgtgctggaccttatctctatcgtgataccatatta
ctgcagaaggtatgcagagttttaagaggttattacctttcagcacttgaacttgtggag
ggtggtgataaagtatcaaatcgcgagtttcttcctggtcaaaataaagttcctcgcatg
caccttaaagaagctaggctgagggtagaggaagctttaggaacatgcctgctcccctct
ttgcagttagtacctgcaaatccagctgttggacaagagatctgggaagtcatgtgtctc
cttccatatgaggtgagatatcgtctatatggagaatgggaaaaagatgatgaaagaaca
cctatgattttggcagcaaggcagactgcaaagttggatactagaagaatcttgaaaaga
cttgcaaaagaaaacttgaagcagctaggtcgaatggttgccaagctagctcatgccaat
ccaatgacagtgctccgtacaattgttcaccagattgaggcatacagggatatgatcact
cctgttgttgatgcattcaaatacctgacacagcttgagtacgacattttggaatatgtg
gtaattgagcgcctggcacaaggagggcgagaaaagctgaaagatgatggaatcaatctg
tcagactggctccagtcactggcttcattctggggtcacctgtgtaagaaatatccatca
atggaactgaggggtctttttcagtaccttgtcaaccagctgaaaaggggtcaaggaatt
gaacttgttcttctgcaggagcttattcaacaaatggcaaatgtccagtacactgaaaat
ctaacagaggaacagctggatgccatggcagggggtgaaactctccggtatcaagttact
tcttttggagtgactcgcaacaataaggcattggtcaaatcaactaaccggctaagggat
tcattgcttccaaaagatgaaccaaagttggccataccgcttttattgctcattgctcaa
catcgttctgtggttgtcataaaggctgaagcaccatacattaagatggtcagtgagcaa
tttgatagatgccatggaacccttcttcagtatgtggaatttctctgtagtgctgtgaca
ccagctacagcatatgcgcaattgattccctcactcaacgatcttgttcacctgtatcac
ctagatcctgaggtagcttttttgatataccgtccagtaatgaggcttttcaaggctcat
ggaagttcagaagtttgctggcccttggatgatgatgagactatggacttagaggctgag
tctgaggagaagtcttgcaacttagttctcgatcttggccgacaaaagaagccaatcatg
tggtcggaccttctagggactgtcaagtctatgttgcctgcaaaagcttggaatagcctc
tccccagatctttatgctacattttgggggctcacattgtatgatctctatgttcctaag
agtcgttatgattctgaaattgcaaagcaacatgcagcacttaaggctttggaggaactt
tctgataattcaagttctgcaattaccaaaaggaagaaagagaaagagaaaattcaggaa
tctcttgatcgtctgactagcgaactacacaagcatgaagaacatgttgcttctgttcgg
agacgactttcatgtgaaaaagacaagtggttgagctcctgccctgatactctgaagata
aatatggagttccttcaacgttgtatatttccacggtgtacttttagcatgtccgatgct
gtctactgtgctatgtttgtgcatactcttcattccctggggacccccttcttcaacaca
gttaaccacattgatgttttgatatgtaaaacattacaacccatgatatgctgctgtact
gaatatgaagtgggaagacttgggaggttcttgtatgagactttaaagacagcctactat
tggaagagtgacgaatccatatatgaacgtgaatgtggtaacatgccaggcttcgctgtc
tattatcgttacccaaacagccagcgtgttacatatgggcagttcataaaggtgcactgg
aaatggagtcaaagaattacaaggttattgatccaatgcctggaatcaacagagtacatg
gagatacggaatgccctcatcatgctgacaaaaatttctggtgttttcccagttactcga
aagagtgggattaaccttgaaaaacgggttgctaagattaaaagtgatgaaagagaagat
ctcaaggtattggcaacaggtgtggctgctgcaatggctgctaggaagccttcatgggtt
accgatgaagaatttggcatgggctatttggaagtaaaacctccatcacttgcttcgaag
tctgtgtcaaccaatttagcagcgtcaaacggtccagcgctagctcagaatgaacatatt
gggggaagaggagcacaaactgatgttgggaactcagtcaaagagcaagctttaagaaca
aaaaatgcagagagagggacggagaaaacagatactgcgtcaggcggaaaaactgatact
ggaaatctaaaagtgaaaggtgggtcagctgcaaatggttcagaggctcagataactacg
cttccagctgttgcacagtctggatcacatcaaagatatgtggaagaatctgcaacaaaa
tttgatgaaagcattactaaagctgctccaaaggactcgactgattctgagttgaaagct
ccagccaaaagatccatagctgccgcatcacttgctaagccgacaaaacaagatggtaag
gatgaaaaatctggaaaaattgctggtaaatcttctgcttctacaaacgataggaatgtt
tctgctcatacatctgagggtaggcaagtagccgctatgaatgtgtctacaactctgaca
actaatgggaatgctaaaggttctactccatctacaagatcttcaattgatgtgcatggg
gttgaagcgaagatggagagtgcagctgccaagtcatctgatgggaggtcttcccatgtt
aaagacgatggaaatgataattatgatgcgccaaaacctccttctcgacttgttcattcc
ccaagacatgagagttctttagcttcttcgaagtctggcgacaagctgcagaaaaggagt
agtcctccagatgaagctgacagggttagcaagcgtcgaaagggggacagtgactccaga
gatttggagggagatgttcgatactctgatagagagaggtctgcagatgctcgatttcta
gatattgaaagaacggggagtgatgagcatagcatctacaggaacacagataagatttcg
gacagaacaaaagagagagttgttgatagatatgatagagattacagggagcgtcctcgt
ggagatgatgttgtggtcgaaagggcaagggatcgttcaatggaacgatatgttagagag
cgttcagttgataaagtgcaggagagaagtaatgacaggagttttgataggcttcctgaa
aaggataggggaaaagatgatagaagcaagctgaagtatggtgaaactgcttcggaaaaa
gttcatgtagacgaccggtttcatgggcagagcctgccaccgccaccgcccttgccaccc
cacgtggtacctcagtcagtcagttctggtagaagggatgaggacagcgatagaaggttc
ggagttaccaggcatactcaaagactttctccaagacatgatgagagggaacgcaggcgg
tctgaagagaacataacttcacaggatgatgcgaaacgaaagaaagaggatgattttcgt
gataggaaacgagaggaacgagaagggatgtcattgaaggtggatgagagggacagggat
agggataaagcgaaccttttgaaagaggaaatggatgcaaatgctgcttcaaaaaggcgg
aaactgaaaagagagcatcttccatccggggaacctggggagttttcaccagtgggccct
cctactgccccagctatcagcacgtcacaatcctatgatagtagggacagaggagaaagg
aaagctctcatgacgcaacgtccaggttatatggaggaaccaggaacaaggatgaaagag
gcggcaagcaagatgggccgtcgtgatgccgatccgatgtatgaacgagaatgggacgat
gaaaagaggcaaagagctgaacagaagcgaaggcatcgcaagtag
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integrated database retrieval system
