Rhodamnia argentea (silver malletwood): 115756314
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Entry
115756314 CDS
T10595
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03030
DNA replication
rarg03420
Nucleotide excision repair
rarg03430
Mismatch repair
rarg03440
Homologous recombination
rarg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115756314
03420 Nucleotide excision repair
115756314
03430 Mismatch repair
115756314
03440 Homologous recombination
115756314
03460 Fanconi anemia pathway
115756314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rarg03000
]
115756314
03032 DNA replication proteins [BR:
rarg03032
]
115756314
03400 DNA repair and recombination proteins [BR:
rarg03400
]
115756314
Transcription factors [BR:
rarg03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115756314
DNA replication proteins [BR:
rarg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115756314
DNA repair and recombination proteins [BR:
rarg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115756314
MMR (mismatch excision repair)
115756314
DSBR (double strand breaks repair)
HR (homologous recombination)
115756314
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
RMI1_C
DUF223
Motif
Other DBs
NCBI-GeneID:
115756314
NCBI-ProteinID:
XP_030551889
UniProt:
A0A8B8QXE1
LinkDB
All DBs
Position
4:13789055..13792402
Genome browser
AA seq
640 aa
AA seq
DB search
MPVNLTPNAIAAINGGDVNSKPLVQVVDIKRIGSTQERYRLLLSDSASSQHAMLATQLND
LVKSGRVRKGAVVQLIDYICSTVQNRKIIVVLNMETIIPDSEIIGNPNMYTESDAVAQKV
LPSINSGNVQSFHNNNINGRNPVQNVQSFQTAVQPPSRANTMQNMQNFRPAVQPPYQPPP
NYRNRGPIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL
DSDGGEVRVTCFNAVVDRFYEIIETGKVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTV
DVCPEEDASIPQQQFSFRPISDIEIVESNSIIDVIGVVISVNPSVPILRKNGMETQRRIL
NLKDGSGRTVELTLWGEFCNREGQKLQEMIDSGFFPVLAVKAGKVSDFSGKSIGTVSSTQ
LFINPDIPEACSLRSWFDFGGKDAASLSISRETMPGGSKNEIRKTVSQIKDEGLGRSDKP
DWVTVKATVSFIKTDTFCYTACPLMIGDRQCNKKVVRSGNARWLCDRCNQEFEECEYRYL
LQVQIQDHTGLTWVTAFQETGEEILGFSAKEMFMLKEQDDERFAENVRSKLFYQFLFRLK
IKEETYGDEQRVKITVVKADKVNYSLESQHMLDLISKVSR
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaacctgaccccgaacgccatcgccgccatcaacggcggcgacgtcaactcg
aagccgctggtccaggtcgtcgacatcaagcggatcgggagcactcaggagcggtaccgc
ctcctgctctccgactccgcctcgtctcagcacgcgatgctcgccactcagctcaacgac
ctggtcaagtccggccgcgtcaggaagggcgcggtggtccagctgatcgattacatctgc
agcaccgtccagaaccgcaagatcattgttgtgctgaacatggagaccattataccagac
tctgaaataatcggaaacccaaacatgtatactgagtctgacgcagtagctcagaaagtg
ctgcctagtatcaactccgggaatgttcagagcttccacaataacaacatcaatggcaga
aatcctgttcaaaatgtacagagtttccaaacagctgttcaacctccttcccgagcaaat
accatgcagaatatgcaaaattttcgaccagctgttcaacctccatatcagcctccgcca
aactacagaaatcgtggcccaattatgaagaatgaggcacctgcacgcatcatacctatc
gctgctttgaacccttatcaaggcaggtgggccataaaagcaagagtcactgcaaaagga
gatcttcgcagatataataatgctcgtggtgatgggaaggttttctcctttgatctcctt
gattctgatgggggagaagtacgggtgacctgcttcaatgcggtcgttgatcgtttctac
gagataattgagacaggaaaagtctacttgatctctaaaggtagcttgaaacctgcacaa
aagaactttaatcatctgaagaacgagtgggaaatattcttggaagccacttcgactgtg
gatgtttgtcccgaggaagatgcttcgatcccacaacagcagttctccttcagacctatt
agtgatattgagattgttgagagtaattctattattgatgttattggtgttgtaatatct
gttaacccctctgttccaatcttaagaaaaaacgggatggaaactcagagaagaattctg
aatctgaaggatggatctggaaggactgtggaattaaccctttggggcgagttctgcaac
agggagggtcagaaactacaagagatgattgattctggattctttccagttttggcagtc
aaggctgggaaagtcagtgacttcagtggaaaatctatcggcactgtttcttcgacgcag
ctttttattaatccagatatcccagaggcttgtagcctgagaagctggtttgattttggg
gggaaggatgcagcttctctgtccatttccagggaaaccatgcctggaggatccaagaat
gagatacgtaagaccgtgtctcaaatcaaagacgaaggcctcggaagatcagataagcca
gattgggtcacagtgaaggcaacggtatctttcatcaagaccgatactttctgttacaca
gcttgccccttgatgattggcgatagacaatgcaataagaaagtggtgaggtcgggaaac
gcaagatggctgtgcgataggtgcaaccaagagttcgaggagtgtgagtacagatatctc
ctccaagtccaaatacaagatcataccggattgacttgggtgactgctttccaggaaacc
ggtgaagagatcttgggattctcagccaaggagatgttcatgctcaaagagcaggacgac
gaaagatttgcagagaatgtccgaagtaaactcttctatcagttcctattcaggctcaaa
ataaaggaggaaacatatggagacgaacagagagtgaagatcactgtcgtcaaggctgat
aaggttaactattctttggagagccaacacatgctagatttgatttcgaaagtctcgcga
taa
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