KEGG   Rhodamnia argentea (silver malletwood): 115756548
Entry
115756548         CDS       T10595                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1 isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
rarg  Rhodamnia argentea (silver malletwood)
Pathway
rarg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rarg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    115756548
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rarg03021]
    115756548
Enzymes [BR:rarg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     115756548
Transcription machinery [BR:rarg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     115756548
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 115756548
NCBI-ProteinID: XP_030552239
UniProt: A0A8B8QYE0
LinkDB
Position
8:20820954..20838317
AA seq 1943 aa
MQTLFPRSFSDSHSPCHSLLLLLPLFLRAKPATANFQGFCRTSALGLEAAGIPKGMEETS
TATLDAEITAIRFGLASRQEICAASISDCSITHASQLSNPFLGLPLEFGRCESCGTSDPG
KCEGHFGYIELPIPIYHPSHVSELKRMISMLCLKCLKMRNNKFPIKNAGVGERLLASCCE
DAAQVSIREVKTSEGAQCLQLKVSSRLRLRDGFWNFLERYGFRYGDNISRPLLPCEVVEI
LKRIPEETKRKLAGKGFFPQDGYIIQYLPVPPNCLSVPEVSDGVSVMSSDLSVTMLRKVL
RQVEIIKGSRSGTPNFESHDVEAQDLQIVVNEYLLVRGTAKASRDIDTRYGIGKEPSNTA
TKAWLEKMRTLFIRKGSGFSSRSVITGDAFKKVNEIGIPTEIAQRITFEEKVSIYNMNYL
QSLVDKKLCLAYKDGSAMYSLREGSKGHTSLRPGQVVHRRIMDGDIVFINRPPTTHKHSL
QALSVYVHDDHTVKINPLICGPLGADFDGDCIHLFYPQSAPAKAEVMELFSVEKQLLSSH
SGNLNLQLATDSLLSLKMMFRKYFYGKLAAQQLAMFVSSELPHPSLLKAHQFCPTWTVLQ
MLQTALPAGFNCCGDKYLISKSNFLDVDYSREFIASMVSEIVTSIFFEKSPVEVLKFFDA
LQPLLMENLFTEGFSVCLEDFYIPQSMIQDIQKNIRVISPLLYHLRTTYNELVQLQLENH
LRLTKLPLSRFILKSSALGDLVDSKSDSAITKIIQQIGFLGVQISDKGKFYSTSLFDEMA
SLFRRKYFFEGVDYPSGEYGLIKSSFICGLEPYEMMVHSICTREVIVRSTRGLSEPGTLF
KNLMAILRDVVICYDGTVRNVCSNSIIQFEYGFEVGAKPENLFPAGEPVGVLAATAMSNP
AYKAVLDSSPSSNSSWELMKEILQCRVNYRNEPVDRRVILYLNRCGCGRKHCSENAACLV
KSHLKKVSLKDLTVDFMIEYKELRTVLESSEAHAGLVGHIHLNEVLLKELNIPMVDVLKQ
CQETINSFRKKKKVGNLFKGTVLSVSDGCSFKPLCAGGRSQMPCLMFSCLDANDPELEKI
THVLANKICPVILDTIIKGDPRINSANIVWINPDTTSWIRNSRRNQKGELALDIVLEKSV
CKRSGDAWRIVLDSCLPILHLIDTKRSIPYAIKQVEELLGISCAFDQAIQRLSTSVAMVA
KGVLKEHLMLLADSMTCSGSLIGFNSAGYKAFSRSLNVQVPFTEATLFTPRKCFERASVK
CHVDALSSVVASCSWGKCVAVGTGSKFDILWGTKDRVDSKQEGATEVYSFLHMVRGPNME
GRGDSTCLGVDIEHLDWEEENAELNRSPENNSEKPVFEDNVEFQENVDVQPNGWNWDKVT
LTDHGSSGWDASATWEKNDKDSTTTGNNGQNTAWSNWGSKKAESQLIDSQADDAKSSWNN
LASGNKDADNNQFGVHDSKDSNWGNGRTDDDDDLHSTKFDQNSSKSGGWGAAAWGSDGGS
QSRKSWDVSEKSVVDGIQRSKSEQQSDGWETTSWGKKPDDEMSWGCAQSVKDKSGRADLD
DSTKANDQPSLSGGWDAVVGVMNEVGPQSEKDWNTRTTETEKQSQWETAGWGKRAEGSEV
SREGWNSTQNADDTSKKVYEDGSQLGKRWNISHSPKTKESDEQSQWEATGWGQKAEDRDM
SQRGWNTSKSVDDISGRADADGLHSTRPNEPSSTSGGWGTVASGQSEGSSQIGKSWNTQN
SKAEGTEKSSQWERQSQWGGDSKKKSKGQHTEWKMRRSLSRPREMINEDPAAPRMYTVTR
QRLDIFTSEEQDILTDVEPIMLSIRRIMHQSGYNDNDPLSAEDQSYVIDTVLNHHPDKAA
KMGAGIEHLTVSKHSSFQDSRCFYVVSTDGSRVDFSYRKCLENFVKTKYPDAADLFIGKY
FRRPRSEGKREQSVAPEEPTENR
NT seq 5832 nt   +upstreamnt  +downstreamnt
atgcagaccctttttcccaggtccttttctgattctcactccccttgtcacagtctcctc
ctcctccttcctctctttctccgagcgaagccagcgacggccaattttcagggtttttgc
cggacttcggcgttgggccttgaagcggctggaatcccgaaagggatggaggaaacttca
acagctactttagatgcagagataacagcaataaggttcggcttggcatctcgacaagag
atttgcgccgcatccatcagtgattgctcaattactcatgcgagtcagctttccaatccg
tttcttggcttgcctctcgaatttgggaggtgtgaatcatgtggcacgtccgaccccggt
aaatgtgaaggtcattttggatatattgaattaccgatcccaatatatcatcccagccat
gttagcgaactgaagcggatgataagcatgctgtgtttaaaatgcttaaaaatgagaaac
aataagtttccaatcaagaatgctggtgttggtgaacgactattagcttcatgctgtgag
gatgctgcacaagtttctataagagaggttaagacatcagaaggtgcacaatgcttgcag
ttgaaggtatcatcaaggttaagattgcgagatggcttctggaactttcttgaaagatat
ggttttcgatatggtgacaatatttctcgacctctacttccttgtgaggttgtggaaatt
ctcaaaagaattcctgaggagaccaaaaggaaacttgctggaaaaggattctttcctcaa
gatggatatattatccagtatctacctgttcctccaaattgcttgtctgttccagaggtt
tctgatggtgttagtgttatgtcctcggatctttcagtgacgatgttaaggaaggttctc
aggcaagttgagatcattaaaggttcaaggtcgggaactcctaattttgagtcccatgat
gtggaggctcaagatttgcaaattgtggttaatgagtacttactagtcagaggtactgca
aaggcatctagagatattgatacacgctatgggattggtaaagagccatcaaatactgct
accaaagcatggcttgagaaaatgcggacgttgtttattagaaaaggctcaggattttcc
tctcgcagtgtgatcactggtgacgcctttaagaaggtcaatgaaataggcattcctact
gagattgcgcagagaataacatttgaggagaaggtcagcatttataacatgaattatttg
caaagtctggtggacaagaagttgtgtttggcatacaaagatggttcagccatgtattca
ctcagagagggttccaaagggcatacctctttgaggcctggccaagttgttcatcgcagg
attatggacggggacattgtgtttatcaatagaccaccgaccacacataagcactctcta
caagcactgtcggtttatgtacacgacgatcacactgtgaagataaatcccttgatctgt
ggacctcttggtgctgacttcgatggggattgcatccacttgttttatccacagtcagca
cctgcaaaggccgaggttatggaactcttttctgtggaaaagcagttgctgagctcacat
agtgggaatctaaatctgcaactagcgacggattccctgttgtcgctgaagatgatgttc
aggaaatatttttatggtaagttagccgctcagcagttggcgatgtttgtttcatcagag
ttgccgcatccttctttattgaaggctcaccagttctgtcctacctggacggttttgcaa
atgttgcaaactgctttgccagcaggctttaactgttgtggagataaatacttgatcagt
aaaagtaatttcttggatgtagattacagtagggagttcattgcatcgatggtcagtgaa
attgtcacgtccatattttttgagaaaagtcctgtggaggttttgaagttttttgatgca
cttcagccattactgatggaaaacttatttacagaaggctttagtgtgtgtctagaggac
ttctatataccccaatcaatgatccaagacattcagaagaacattcgggtaatatcgcca
ctgctgtatcacctaagaacgacttacaatgaactggtgcaattgcagctggaaaatcac
cttcgattaacaaaactgccgctatcgcgatttatcttgaagtcatctgcgctgggtgat
ctggtggactcgaaaagtgattcagcaatcactaagataattcagcaaattgggtttctt
ggtgttcaaatctcagacaagggaaaattctattccacctcgttgtttgatgagatggcc
tccctttttaggaggaaatatttctttgaaggagttgattatccatctggtgagtacggt
ttaatcaagagctccttcatttgcgggttggaaccatatgagatgatggtccattctata
tgtactagggaggtcattgtacgatctacaaggggattgtctgaaccaggaacactgttt
aaaaatctaatggccatccttcgagatgtagtcatatgctacgatggcactgtgcggaat
gtttgcagcaattcaattattcaatttgagtatggttttgaggttggagccaagccagaa
aatctcttccctgcaggagagcccgttggtgtattagcagcaactgccatgtcaaatcct
gcttataaagcagttcttgattcctctcctagtagtaattcctcatgggagctaatgaag
gagatactgcaatgccgagtcaactatagaaatgaaccagtcgatcgccgtgtaattttg
tacttgaatcgatgtggttgtggaagaaagcattgcagtgaaaatgcagcatgtctagtc
aagagtcacttgaagaaagtgagtctcaaagatctcacagttgacttcatgatcgagtat
aaggaactacggacagtgttggaaagctctgaagctcatgctggactggttggtcatatt
catctcaatgaggtgcttctgaaagaattgaacatccccatggttgatgttctgaagcag
tgccaagagaccatcaactcattccgcaagaagaaaaaagttggtaatcttttcaagggc
acagtattatctgtcagtgatggctgctctttcaagccattatgtgcaggtgggagatcc
caaatgccatgcttgatgttctcttgtttggatgcaaatgatcctgaattggagaaaatt
acacatgttcttgccaacaagatatgtcctgttatacttgatactatcatcaaaggtgac
ccccggattaactctgcaaacatcgtctggattaatcccgatacaacatcttggataaga
aactctcgcaggaatcagaagggtgaactggccctggatattgttcttgaaaagtcagta
tgcaaacgaagtggcgatgcatggaggattgttcttgactcatgccttcctatacttcat
ttaattgacacgaaacggtcaattccatatgcaataaagcaagttgaggaattgcttgga
atatcatgtgcttttgatcaggcaatccagcgtctttcgacgtcagttgcaatggtggcc
aaaggcgttctgaaggagcatctcatgctccttgcagatagtatgacttgctctggaagt
ctgattggcttcaactctgctggatataaagccttttcccggtcactgaatgtccaagtt
ccattcaccgaagcaacactttttacacccagaaaatgctttgagagagcttcggtgaag
tgtcacgtggatgctttgtcaagtgtcgtggcatcttgttcctggggtaaatgtgttgct
gttggcacaggctccaagtttgatatcctctggggcacaaaagacagggtggattcgaaa
caggagggtgccactgaagtgtatagtttccttcatatggtaagaggccccaatatggaa
ggaagaggagattctacttgtcttggtgttgatattgagcatcttgactgggaagaggaa
aatgcagagctcaaccgatctccagaaaacaattctgagaaacccgtttttgaagacaat
gttgaattccaggagaatgtcgacgttcagccgaatggatggaattgggacaaagtcaca
ttgacagatcatggatccagtggttgggatgctagtgctacctgggagaagaatgacaaa
gattcaaccacaacaggaaacaatggacaaaatactgcatggtctaattggggatccaag
aaagcagagagccaacttatagactctcaagcggatgatgcaaagagcagttggaacaat
ttggcatctggtaataaagatgctgataacaaccagtttggtgttcatgactcaaaggat
tcgaactggggcaatggtagaactgatgatgatgatgatcttcattctacaaaattcgat
caaaattcttccaaatctggtggatggggggctgctgcctggggtagtgatggtggctct
cagagcagaaagagttgggatgtttctgaaaaatctgtagtcgacggaattcaaagaagt
aaatcggaacaacaaagtgatggatgggaaactacaagctgggggaagaaaccggatgat
gaaatgagttggggttgtgctcaaagtgtcaaagataagtctggaagagctgatctggac
gactctaccaaagccaatgaccaaccttctttatctggtggatgggatgctgtggttggg
gtcatgaatgaagtcggtccacaaagtgaaaaagattggaatacccgaactacagaaact
gaaaaacagagtcaatgggaaactgcaggatggggcaaaagggctgagggcagtgaggtg
tctcgagagggttggaacagcactcaaaatgcagatgatacctccaaaaaagtttatgaa
gatggttctcaacttggtaaacgttggaatatttctcacagtcctaaaactaaggaatca
gatgaacagagtcaatgggaagccacaggctggggacaaaaggctgaggatagagatatg
tctcaacgaggctggaatacttctaaaagtgttgatgacatatctggcagagctgatgca
gatggtcttcattctacaagacccaatgaaccgtcttccacatccggtggatggggtact
gtggcctcgggacagagcgaaggcagttctcaaattggaaaaagttggaatactcaaaat
tctaaagctgaaggaacagaaaaatcaagtcaatgggagcgtcagagccaatggggagga
gattcaaagaagaaaagcaagggacagcatactgaatggaaaatgagaaggagcctttcg
cgacctcgtgaaatgataaatgaggacccagctgctcctcgcatgtacacggtaacgagg
caaagattagacattttcacatcagaggaacaggatatactcacagatgtggagccgatc
atgctgtcaattcgaaggataatgcatcagtctgggtacaatgacaatgatccgctgtca
gctgaggatcaatcctacgtaattgatacggttttaaatcaccatccggataaagcagct
aagatgggagcaggaattgagcatctgacggttagcaaacatagcagcttccaagacagc
cgatgcttctatgtggtctccaccgatggttctcgggtggacttttcatatcgtaagtgt
ctagagaattttgtcaagaccaagtaccctgatgctgcagacttatttattggaaaatac
tttagaagaccccgctccgagggaaaacgggagcagagcgttgccccagaagagcctaca
gaaaatagatag

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