Rhodamnia argentea (silver malletwood): 115756985
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Entry
115756985 CDS
T10595
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115756985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115756985
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
115756985
mRNA cycle factors
Common to processing body (P body) and stress granule
115756985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
115756985
NCBI-ProteinID:
XP_030552881
UniProt:
A0A8B8R091
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All DBs
Position
4:complement(15873378..15881205)
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AA seq
972 aa
AA seq
DB search
MIILMDSMPAPSWERARRLYAKNIELDNRRRKSAQARIPSDPNIWQQMRENYEKIILEDH
SFSEKHNIEHALWQLHYKKIEELRAHYTAAQASANSNASLNGKGPSTRPERITKIRLQIK
TFLSEATGFYHDLILKIRSKYGLPLGYFSEDADNGLLCEKDGKKSADAKKVLISCHRCLI
YLGDLARYKGLYGEPDSKAREFAAASSYYVQAASLWPSIGNPHHQLAILASYSGDDLVTI
YRYFRSLAVDSPCSTARDNLIVAFEKNRQSYSQLHGDANTSTVRSAGKGRGQKAKAGSKD
TVSEAATFKESKANSHDTYKSLCICFVRLNGILFTRTSLETFAEVLSLVVTSLCDLLYSG
PEEEMNFGKDAFENGLFLVRLVAILIFTIHNVKRESEGQTYAEIVQRAVLLQNAFTAVFE
IMGHVVERCEQVHDPSLSYLLPGILVFVEWLASYPDVATGSDEDEKQATARSNFWSYYVS
LMNKLLSMGSMSIDDHDDSCFGNMSKYEEGETGNLFALWEDFELRGFLPLVPAQAILDFT
RKHSFGSEGHKEKSARIERTLAAGKVLVGAVKINDKTVWFDSKAKRFVIGVESQMSGEDR
IPPNSHVPTANDLVLETGGQTSVKFEEPLPNSQLYVEGEDEDEEIVFQPTAMEKQTDTAV
QSFVPLGMLEPQKNDFGAHQPMSIASTSAPLDKFLHVTTSDAFSWNPVSAGNLQPNKSHT
SNWLTEETLQSNSFKDRTMLENGYLAQPEIKESTVNSFPVVHSVSIRQPAVNSNGFFLNQ
ANAPEAAVLSSGYNAANSFGVSVDALIAKPSSAFPIGLKKNPVARPLRHHGPPPGFNAVP
KQTHGPISGFDLTGQNQMLDDYSWLDGYHISSAIKGIGNNSISYPSHANSPQITSGAASI
GTVSFPFPGKQVPAAHQLEIQKGWQDYENLERLKLQHEKQVQQPQQIINRNPQLDPLLEQ
YQGSVWTGRHFV
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgatcattctgatggatagcatgcctgctccatcctgggagcgtgcacgtcgtctttat
gcaaagaacattgagttggataataggcgtcgtaagtctgcccaggcacgaattccatct
gacccgaacatatggcaacagatgcgtgagaactatgaaaagataatcctcgaggatcat
tcattttctgagaagcacaatatcgagcatgctttgtggcaattacattacaagaaaatt
gaggaattgagagcacactatactgctgctcaagcatcggctaattcaaatgcatcattg
aatgggaaaggaccctccactcgacccgaacgaataacaaaaataaggctgcagattaag
acttttctctctgaagcaactgggttctatcatgatctgatcttgaaaatcagatcaaag
tacggtctccctcttggttacttctcggaggatgcagacaatgggcttttgtgtgagaaa
gatggaaaaaaatctgctgatgcgaaaaaagttttaatatcctgtcaccgttgcttgatt
tatttgggtgaccttgcacgttacaaaggtctgtatggagaacctgactcgaaagctcgt
gagtttgcagcagcttccagttactatgtccaagctgcatctctttggccgtctattggg
aacccccatcatcagcttgctatattagcttcgtattctggggacgatttggtaactatt
taccgatatttccggagtttggctgtggatagcccatgttcaacagcaagggacaacttg
attgttgccttcgaaaagaaccgtcagagttactctcaactgcatggagatgctaacact
tctaccgtgcgatctgctggaaaaggaagaggacagaaagccaaggctggatccaaagat
accgtttctgaagctgcaacttttaaggaaagtaaagccaacagtcatgatacctacaaa
tcgctttgtatctgcttcgtgcgactaaatgggattttgttcactagaacaagcttggag
accttcgcggaagtcctttctttggttgtcactagtttatgtgatcttctgtattctggg
ccagaagaggagatgaattttggaaaagatgctttcgagaacggactattcttggtcaga
ctcgtggctatcctcatatttaccattcataatgtgaaacgcgagagcgaaggccagact
tatgcagaaatagttcagcgtgctgtgctgcttcaaaatgcattcactgcagtttttgag
atcatggggcatgttgtggagagatgcgaacaagttcatgatccttccttgagttacctc
ttacctggcattttggtttttgtagaatggttggcatcttatcccgacgttgccacgggt
agcgacgaggatgagaagcaggcaactgctagatcaaatttctggagttattatgtttct
cttatgaataagctcttgtcaatggggtcgatgtccatagatgaccatgatgatagttgt
tttggtaacatgagcaaatatgaagaaggagaaactggaaacctgtttgctttgtgggaa
gattttgagttgagaggatttctacctcttgttcctgcacaagccattttagattttaca
aggaagcattcttttggaagtgaaggacacaaggaaaaaagtgctcgtattgaaagaact
cttgctgcagggaaagtgcttgttggtgcggttaaaatcaatgacaaaacagtttggttt
gactcaaaggcaaagagatttgtgattggtgttgagtcccaaatgtcaggagaagaccgt
attcctcccaattctcatgtccctacggcaaatgatctggtgctagaaactggaggacaa
acttctgtaaaatttgaagaacctctgccgaattctcagctatatgtggaaggggaagac
gaggatgaagagattgtttttcagcctacagcaatggagaagcaaacagataccgctgtt
caaagtttcgttcctttggggatgctggagccccagaagaatgactttggagctcatcaa
cccatgtcaattgcttctacatcagcacctcttgataagtttctgcatgtgactacttca
gatgcattttcatggaaccccgtttcggctggtaatctgcaacctaacaaatcacatact
tcaaattggttgacagaagaaacgttgcagtccaatagcttcaaagatcgaacgatgcta
gagaatgggtatcttgcgcaacctgagatcaaagagagcactgtcaactcttttcctgtg
gtccattcagtttccatcagacagcctgctgttaatagcaatggtttttttctgaatcag
gcaaatgctccagaagctgcggttctttcgtccggatataatgctgccaattcttttgga
gtgagtgttgatgctttgattgcaaaaccatcatctgcttttcctataggtttgaagaag
aatcctgttgctcggcccctcagacatcatggtcctccccctggttttaatgctgttcct
aagcaaacccacggacccatttcgggtttcgacttgactggtcagaatcaaatgttggat
gactatagctggctggatgggtatcacatatcttcagcaatcaagggcatcgggaataat
tccataagttatccatctcatgcaaactctccgcagataactagcggtgctgcttcaatc
gggacagtcagcttcccatttcctggaaagcaggtccctgcagcccaccaactggaaata
cagaaaggctggcaagattatgagaatttggagcgtctaaagctacaacatgagaagcag
gtgcagcaacctcagcaaataattaacaggaacccacagcttgatcctttgctggagcag
taccaaggatcagtctggacaggtcgtcattttgtgtga
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