Rhodamnia argentea (silver malletwood): 115756986
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Entry
115756986 CDS
T10595
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115756986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rarg03019
]
115756986
Messenger RNA biogenesis [BR:
rarg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
115756986
mRNA cycle factors
Common to processing body (P body) and stress granule
115756986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
115756986
NCBI-ProteinID:
XP_030552882
UniProt:
A0A8B8R083
LinkDB
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Position
4:15884941..15892760
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AA seq
969 aa
AA seq
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MIIPTDNMPAPSWERARRLYEKNIELDNKRRKSAQARIPSDPNVWQQMRENYEAIILEDH
SFSEKHNIEHALWQLHYKKIEELRAHYSAAQASANPNASVNGKGPSSRPDRITKIRLHFK
TFLSEATGFYHDLILKIRSKYGLPLGYFSEDVDSRLLSEKDGKKSADLKRVLISCHRCLI
YLGDLARYKGLYGEPDSKSREYAAASSYYLQAASLWPSIGNPHHQLAILASYSGDDLLTV
YRYFRSLAVDNPCSTARDNLIVAFEKNRQSFSLLHGDAKTSVVRSAGKVRGQPAKLASKD
TVAEAATLRESNSNTHDTYNSLCIHFVRLNGILFTRTSLETFAEVLSLVVTGLCDLMSSG
PEEEMRFGNDAFENGLFIIRLVSILIYTIHNVKRESEGQSYAEIVQRAVLLQNALTAVFE
IMGLVMERCEQVCDPSLSYLLPGILVFVEWLASYPDVATGGDVDEKQATVRSNLWRHYIS
LMNKLLSIGSMSIDDCDDESCFDNMSRYEEGETGNRLALWEDFELRGFLPLVPAQTILDF
SRKHSFGSEGIKEKNARVKRTLAAGKVLVGGVEINNETVWYDSKAKKFVIGVESQLSAED
IRPPESTVPKANDMLLENGVQMAVESKEFLSNSQLYVEGEEEDEEIVFKPTAAEKQTNTA
VQNMVSSKMLEQPQKNAFGSDQPFSIASMSGPPDNSLHLTTSDAFSWNPVSAGNLQPIKS
HTSNWLTEETLLSNSFKDLRMLENGHLAHAEINENTVNFFPAVNSFPIRQSAINSDSLFL
NQANAPDAVVPSFIYNPLMSSGVSVDALAAKPSSASPVGLKKKPVARPIRHIGPPPGFSA
VPKQANGPFSGLDLTYQNQMLDNYSWLDGYQMSSAFGGIGDNSISYSSFANLPPISSSAA
SIGTVSFPFPGKQVPSVHQTENHKGWHDHETVEHQKQMQQTQQMINGNPQLGPLPEQYQG
SVWTGRHFV
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgatcataccaacagataatatgcctgctccgtcttgggagcgtgcacgacgactttat
gaaaagaacattgagttggataataagcgtcggaagtctgcccaggcacgaattccatct
gacccaaacgtatggcaacagatgcgtgagaactatgaagcaataattcttgaggatcat
tcattttcagagaaacacaatattgagcatgctctatggcaattgcactacaagaaaatt
gaggaattgagggcacactatagtgctgctcaagcatctgctaatccaaatgcatcggtc
aatgggaaaggaccctcctctcgtccggatcgaataacgaaaataagactgcattttaag
actttcctttctgaagcaactgggttctatcatgatttgatcttgaaaatcagatcaaag
tacggtctccctcttggttacttctctgaggatgtagacagcagacttttgtccgagaaa
gatggaaaaaaatcggcggatctaaaaagggttctaatatcttgtcaccgttgcttgatt
tatttgggtgaccttgcacgctacaaaggactgtatggagagcctgactcaaaatctcgt
gagtatgcagcagcttcaagttactatctccaggctgcatctctttggccgtctattgga
aatccacatcatcagcttgcgatactagcttcttattctggtgacgatttgctgactgtt
taccgatactttcggagtttggctgtggataacccgtgttctactgcaagggacaacttg
attgtggccttcgaaaagaatcgtcagagtttctctctactgcatggggatgctaaaact
tccgtggttcggtctgctggaaaagtgagaggacagccagccaagcttgcatctaaagat
actgttgctgaagctgcaactttgagagaaagtaactccaacacccatgatacctacaac
tcactttgcatccattttgtccgtctaaatgggattctgttcactcgaacaagcttggag
acctttgcagaagtcctctctttggttgtcactggtttatgtgatcttatgtcctctggg
ccggaagaagagatgcgttttggaaatgatgcttttgagaatggtcttttcattatcagg
cttgtgtctatccttatatatactattcataatgtgaaacgcgagagtgaaggccagagt
tatgcagaaatcgtccagcgtgctgtactccttcagaatgcattgactgcggtttttgag
atcatgggacttgtgatggagagatgcgaacaagtttgtgatccttctttgagttacctc
ttacctggcattttggtctttgtggaatggttggcatcttatcctgatgttgccacgggc
ggcgatgttgatgagaagcaggcaactgttagatcaaatttgtggcgtcattacatctct
cttatgaataagcttttgtcaatcgggtcgatgtccatagatgactgtgacgatgaaagt
tgctttgataacatgagcagatatgaagaaggggaaactggaaaccgccttgctttgtgg
gaagattttgagttgagaggatttctgccgcttgttcccgcacaaaccattttggacttt
tcaagaaagcattcttttggaagcgaagggatcaaggaaaaaaatgctcgtgttaaaaga
actcttgcagctgggaaagtgcttgtaggaggggttgaaatcaataatgaaacagtttgg
tatgactcaaaggctaagaaatttgtcattggtgtggagagtcaactgtcagcagaggac
attcggcctcccgagtctactgtgcctaaggcaaatgacatgttgctagaaaatggagtg
caaatggccgtggaatcgaaagagttcctgtcgaattctcaactatatgtggagggggaa
gaggaagatgaagagattgtttttaagccgacggcagcagagaagcaaacaaacactgct
gttcaaaatatggtctcttctaagatgttggagcagccacagaaaaatgcctttggaagc
gatcaacccttctcaattgcttctatgtcagggcctccggataactctctgcatttgacc
acttcagatgctttttcgtggaaccctgtttctgctggtaatttacagccgatcaaatca
catacttcaaattggttgacagaggaaactttgctgtctaatagcttcaaagatctaagg
atgctggagaatgggcatctggcacatgctgagatcaatgagaacacggtcaactttttc
cctgctgttaattcatttccaatcagacagtctgctattaatagtgacagcttgtttctg
aatcaggccaatgctccagatgctgtggttccttcattcatatataatcctctcatgtct
tctggagttagtgttgatgctttggctgcaaagccatcatctgcttctcctgtaggtttg
aagaagaaaccagttgctcggccaatcagacatattggtcctccccctggttttagtgct
gttcctaagcaggccaatggacccttttctggtttagacttgacctatcagaaccaaatg
ttggacaattatagctggttggatgggtatcagatgtcttccgcatttgggggcattggg
gacaattccatcagttattcgtcttttgctaacttgccgcccattagtagcagtgcggct
tcaattgggacagtcagcttcccgtttccaggaaagcaagttccatcggtccaccaaacg
gagaatcataaaggctggcatgatcacgagactgtggagcatcagaagcagatgcagcaa
actcagcaaatgattaatgggaacccacagcttggtcctttgccagagcagtaccaagga
tcagtctggacaggtcgtcattttgtgtga
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