Rhodamnia argentea (silver malletwood): 125312795
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Entry
125312795 CDS
T10595
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 46-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rarg Rhodamnia argentea (silver malletwood)
Pathway
rarg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rarg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125312795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rarg03041
]
125312795
03009 Ribosome biogenesis [BR:
rarg03009
]
125312795
Enzymes [BR:
rarg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125312795
Spliceosome [BR:
rarg03041
]
Complex A
U1 snRNP components
U1 related factors
125312795
Complex B
125312795
Ribosome biogenesis [BR:
rarg03009
]
Eukaryotic type
Pre-60S particles
Helicases
125312795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125312795
NCBI-ProteinID:
XP_048128276
UniProt:
A0ABM3GV87
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All DBs
Position
11:complement(23843001..23848657)
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AA seq
730 aa
AA seq
DB search
MAATATMSSSGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTGTSSSAHI
SSSVQVRQPSPGQQRGYNPDREDDRYGRGNNGGSRGIQSAVGGTVSLQNGPKGTVGLGHV
APSVKEQGPLSTGSSLSADAYRRHHEITVSGADVPPPLISFEATGFPSEILREVHIAGFS
APTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHIKRCRNNSRMGPTVLVLSPT
RELATQIQDEAVKFAKSSKISCVCLYGGAPKAPQLRDIDRGADIVVATPGRLNDILEMKR
ISLSQVSYLVLDEADRMLDMGFEPQIRKIVRDVPARRQTLMYTATWPKEVRKIAADLLVN
PVQVNIGNVDELVANKSITQHVELLAPMEKHRRLEQILRSQEPGSKIIIFCSTKKMCDQL
ARNLSRQFGAAAIHGDKSQSERDFVLNQFRTGRSPILVATDVAARGLDIKDIRVVINYDF
PTGVEDYVHRIGRTGRAGASGLAHTFFGEQDAKYAAELIKVLEGANQRVPPEIRNMASRG
GGMGRFRRWGSDSGGRDGGRGGRGDSGYGGRDGGRVGWSFSASASSKPDKGGGRGYGSES
RDRFSSGHDGYERARSRSPKGSGGWVDRASNWSRDRSRSPDRSEHNRARSPVRSFHQAMM
ERSQSHRPGASQSPRCPRSPSPRGKDKERGNFGGSHGDAPSKWDGGYGGGSRSSYLGEEE
EGMIPADGGR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaactgcaaccatgtcgtcttctggtcctcgctatgctccagaagatcccact
cttcccaagccctggagagggcttgttgatgggaaaacgggttatctctacttttggaat
ccggagactaacgttactcagtatgagaggcccactggcacttcgtcttcggctcatatc
agctcttctgttcaagttcgacagccatcgcctggtcagcagcgaggttataatcctgat
agggaagatgatcgatatggccgaggaaacaatggtgggtcaaggggcattcagagtgca
gttggtgggacagttagcttgcaaaatggtccaaagggaacagttggtcttgggcatgta
gcaccttctgtgaaagaacagggtcctttaagcaccgggagtagtttatctgctgatgct
tatcggcgtcatcatgaaatcactgtttctggagctgacgtgcctccaccgttgatatca
tttgaagctacaggattcccttcagagattctcagggaagtacacattgctgggttttct
gctccaaccccaattcaggcacagtcatggcctattgcactccaaagtcgagatattgtg
gccattgctaaaactggttccgggaagacgctgggatatctactaccaggcttcatccat
atcaagcgatgccgtaataattctcgtatgggtccaactgtgctggtactgtcacccacg
agggagttggcgacgcagatacaagacgaagctgtcaagtttgctaaatcatcaaaaatt
tcctgtgtgtgtctctacggaggagcaccaaaagctccccagttgcgggatatagacaga
ggagctgacattgtggttgccactcctggacgtttgaatgatatcctcgagatgaagaga
atcagcctcagtcaagtttcgtaccttgtgctggacgaggcagatcgaatgctggacatg
ggtttcgaacctcagataagaaagattgtgagggatgtgcctgctcgccgccagactctc
atgtatactgctacgtggccaaaggaggttcgtaaaattgcagcagatctgctggttaat
cctgtgcaggttaatattggaaatgtggatgagcttgttgcaaacaagtctatcacacag
catgtggaactcctggctcccatggagaagcacagacgattggagcagatacttcgctct
caagagccagggtcaaaaataattatcttctgttctactaagaaaatgtgtgatcagctt
gcccgtaacctctcccgccagtttggagctgctgcaatacatggagacaagtctcagagc
gagagggattttgtgctgaatcagtttcggactggaagatctccaattttggtagcaact
gatgtagcagcccgtggattggatatcaaagatatcagggtggttatcaattatgacttc
cctactggtgtggaggattatgttcatcggattggaagaactggaagagcaggagctagc
ggattagcgcatacgttttttggtgaacaggatgcaaaatacgcagcagaactcatcaaa
gttcttgagggggcaaaccagcgagtcccaccagaaattcgtaatatggcttctcgtggt
ggtggaatgggaaggtttagacgctggggctctgattctggtggtagagatggaggccga
gggggacgtggtgattctggttatggtggaagagatggtggaagggtaggttggtcattt
tctgcttctgcttccagcaagccggacaaaggtggcggtcgtggctatggttctgagtca
cgtgataggtttagtagtggccatgatggatatgagagagctagaagtcggagtcccaag
ggatcaggtggctgggttgatcgtgctagtaactggagtcgtgaccgcagccgtagccct
gataggtctgagcataacagggctcgttccccagttcgcagcttccaccaagccatgatg
gagagaagccaatctcatcgcccaggtgcatctcagagtccgcgatgtccaaggtctcct
tcgccccgtgggaaggataaagagagagggaattttggggggtcgcatggtgatgctcca
tcaaaatgggatggaggatatggcggtgggtcccgctcttcttaccttggggaagaagag
gaaggcatgattcctgctgacggaggcagataa
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