Rickettsia asiatica: RAS_00650
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Entry
RAS_00650 CDS
T06307
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ras
Rickettsia asiatica
Pathway
ras03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ras00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RAS_00650 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ras03021
]
RAS_00650 (rpoC)
03400 DNA repair and recombination proteins [BR:
ras03400
]
RAS_00650 (rpoC)
Enzymes [BR:
ras01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RAS_00650 (rpoC)
Transcription machinery [BR:
ras03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RAS_00650 (rpoC)
DNA repair and recombination proteins [BR:
ras03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RAS_00650 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
DUF7749
Motif
Other DBs
NCBI-ProteinID:
BBJ30956
UniProt:
A0A510G6G2
LinkDB
All DBs
Position
complement(54150..58268)
Genome browser
AA seq
1372 aa
AA seq
DB search
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYEELQTTSSEVKKKKLVKRLKLVEDFLESENKPEWMIID
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGISTTIKAAKRMVEAEKPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDNEVGEGMMFSDLAEMEHALYNK
FITIHTKIKYRRNQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATIIFADQLMKLGFKYSCSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPINDDPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTAAI
DIFHPVTNDLILNKGELINEAKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYDAKVKIISRNVI
INSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEV
ITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEVDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVMD
SGGTTLLAGEKIDRHEFNEINEKAIKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENV
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagtaaatttttacggacaattaagtaatactcaacaatttgatcagataagg
attaatatagcaagtcccgatcaagtacgttcgtggtctttcggtgaagtaacaaaacct
gaaacaattaactatcgaacttttaaacctgagaaagacggtttattttgtgcaagaatt
tttggtccggtaaaagattacgaatgtctctgcggtaaatataagcgaatgaaaaaccgt
ggaattacgtgtgagaaatgcggtgttgaagttacggtttctagagtaaggcgtgaaaga
atggggcatatagagcttgcagctcccgttgctcatatttggtttttaaagtcactgcct
tcaagaattagtacgcttcttgatatgacaatgcgagatgtagaaaagattctttatttt
gaaaattatgtagtagttgacccagggttatcgattttacaaaaaggcgaactcttaaca
gaggaagaattacagaaagcaaaagataagtacggtgaagatgcatttactgcctctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagaa
ttatatgaggaattacaaaccacttcttcagaagtcaaaaagaaaaaattagtaaagcgt
ttaaaattagtagaggattttttagagtcggaaaacaaaccggaatggatgattatagat
gttttgccagttattcctcctgaaattagaccgcttgttatgcttgacggcggaagattt
gctacttcggacttaaatgaactttatagaagagtaattaatagaaataatcgtttaaag
aaattaatagagtcaaaagctcctgatataatagtcagaaacgaaaaaagaatgttacaa
gaagcagtggatgcgttatttgataacggtcgtcgtggtagagcagcgaaaaatgctaat
aagcgtccatttaagtcattaagtgatatgcttaaaggtaaacaggggcgtttccgtcag
aacttgctaggtaagagggttgattactcaggacgttcggttatcgtggtaggacctgag
cttaaacttcaccagtgtggcttacctaaaaaaatggctctggagctatttaagccgttt
atttattctaagcttgagttgtacggcatctctacaactattaaagccgctaaaagaatg
gtagaagctgaaaaacctgaagtttgggacgtgcttgaagaagtaattagagagcatccg
gttctacttaatagagctccgacgttacataggcttggtattcaagcatttgaaccacta
ttaatcgaaggtaaagcgatccagcttcatccgcttgtttgtgctgcgttcaatgcggat
tttgacggtgatcagatggcggtacatatcccgttatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagccccgcaaacggtcgtcctattatt
gtaccggataaagatatagtgcttggtttatattatctaacccttgcatttgataatgaa
gtaggcgaagggatgatgttctcagatttagctgagatggaacatgctttatataataaa
tttataactattcatacaaagataaaatatcgcagaaatcagttaaatgccgaaggtaaa
atggtccctgttatcattgatactacttacggtaggttaatggtcggtgagttattgcct
tctaatcctaatatagaattcaagtttattaataaacaactaactaaaaaagacatatca
ttagttatagatttagtttatcgtcactgcggtcaaaaagctacgataatttttgccgat
cagctaatgaaactagggtttaaatattcttgttcttcaggtatttcttttggaatggac
gatatggtagtaccggaatctaagagtactcatatcaatgaaactcagcttgaaataaaa
gaatttgaacaacaatattcaaacggtttaattacttacggagagaaatataataaagta
gttgatgcttggtcaagatgtaccgatagagtagcaaacgacatgatgaaagagattgct
acgccgccgattaatgatgatccaaatcatcagaaaataaatgctatatatatgatggct
atttccggagcaagaggttctttccagcaaattaaacagctaggcggtatgcgaggttta
atgaccaaatcaaacggtcaaattatacaaactcctattatctctaactttaaggaagga
ttaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaatagatacg
gctttaaaaacggcaagctcaggttacttaacaagaaaattagtagatgttgcacaagat
tgtattattactgaaaaagattgtggaactgataaaggaattgaagttaagagtgttatt
gaaggcggagaagttatagtacctttagctgaaaagattttaggtcgtactgctgctatc
gatatatttcatccggtaactaatgatctaattctcaataaaggcgagcttattaatgaa
gcaaagttagagcagattgagtcggcgggactcgacagaattatgataaaatccgtatta
acctgtgaaagtactaccggtatatgtagcatatgttacggtagggatcttgctaccggt
acattagtatcggagggtgaagcaattggggttattgctgctcaatctatcggtgaaccg
ggtacacagcttacaatgagaactttccatatcggaggagcggcaacaaaaggtgctgag
gtttcttccgtagaagcttcctatgacgcaaaagtgaaaattataagccgtaacgttatt
attaattccgaagaacgcaaaattgttatgagccgaaattgtgaattattattgcttgat
aataacggtaatgaaaaggctcgtcataaaattccatacggtgctagattacttgttgat
gacggtgatatggttattaaaactcaaaaactagcggagtgggatccttatactataccg
attatcacggagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgacgtaactgacgaagctaccggaataccgagtaaagttattattgaatcaaagcaa
tattcacgcggtgcagaattacgtccgcgtatacagcttttagatgctaaaggtgaagtt
ataaccttatcgaacggtttagaagctagatattacttgccggttggagcagttttaagc
gtagaagacggagtacaaatatcggtaggtgatatcattgcacgtataccgaaagaatca
accactactaaagatattaccggtggtttaccgagagttgccgaacttgtagaagcaaga
cgtcctaaagatcacgcagttattgccgaggttgacggtagagtagaattcggtaaagac
tataaatctaaaagacgtattattatacatccgattgatgaaacaatgtctattgagtat
atggtgccgaaaggtaagcatgttgtagttaacgaaggtgactttgttaaaaaaggtgat
ttattgattgacggtaatccggtactccaagatattttaaaagtaatgggtgtagaggtt
cttgcaaattatattgttaaggaggttcaagccgtttatcgtctacaaggtgtaaagatt
gatgataagcacatagaagttattatccgtcagatgttacaaaaagtagaggtcatggat
tcaggtggaactacgttattagcaggtgaaaaaatagatagacatgaattcaatgagata
aatgagaaagctattaaaaatggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctgcaaactagatcgtttatctctgcggcatcattccaagagact
actagagttttaactgaagcagctattgccggtaaagtagataagttacgaggactaaaa
gaaaacgtgatagttggacgattagtacctgccggaaccggttactttatggataaaatg
cgtaaagcagctgtaaagcttgatgaagaaaatgtataa
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