Rickettsia asembonensis: PG979_000178
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Entry
PG979_000178 CDS
T09987
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rase
Rickettsia asembonensis
Pathway
rase03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rase00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PG979_000178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rase03400
]
PG979_000178
Enzymes [BR:
rase01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PG979_000178
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PG979_000178
DNA repair and recombination proteins [BR:
rase03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PG979_000178
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
IBR_1
Ribosomal_S13
Zn_ribbon_RPB9
Motif
Other DBs
NCBI-ProteinID:
WCR56121
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Position
125330..126160
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AA seq
276 aa
AA seq
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MPELPEVETLKNSLKDKLIGLIIENVELKRDNLRYKLSPLLASEISNTNILDVRRRAKYL
IIDFNNDYSLIVHLGISGRFTLQPSNYETKKHDHVIFDLSNGEKLIFNDTRRFGMVYSFK
TNFLEKEFFNDLGIEPLSDLLTLGYLKNKLITRKIPIKNLIMDNGIIVGVGNIYASESLY
LARIHPDKLGSNLRDDEIESLIKSIREVLAKAITAGGTTIKDFVNGDNKPGYFTQQLTVY
SREGQNCLNCSSTIIKTKHSGRSTFYCRTCQYSEFT
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcctgaagtagaaactcttaaaaactccctaaaagataagctaatcggg
cttattatagaaaatgtagagttaaaaagagataatttacgttataagctatccccactt
ttagcttctgaaatctcaaatactaatatactggatgttaggcgtcgtgcaaaatattta
attatagattttaataatgattattctttaatagttcatctaggtataagcggtagattt
actctgcaaccttctaactatgaaactaaaaaacacgatcatgtaatttttgatttaagt
aacggtgaaaagttaatttttaacgatactagacgattcggaatggtttatagctttaaa
actaatttcttagaaaaagaattttttaatgatttaggaatagaaccgctttctgattta
ttaacactgggatatttaaaaaacaaactaattactcgaaaaataccgataaaaaattta
attatggataatggaattatagtcggagtcggcaatatttacgcttcagaaagtctttat
ttagctagaattcatccggataaattaggtagcaacttaagggatgatgaaatagaaagt
ttaattaaatcgattagagaagtattagctaaagctataactgccggcggcactaccatt
aaagattttgtaaacggtgataacaaacccggttattttacccagcaacttacggtttac
agcagagaaggacaaaattgtttaaactgctctagcactattatcaagacaaaacattca
ggcaggagtactttttattgtagaacctgtcaatatagtgaatttacttga
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