Rickettsia asembonensis: PG979_000740
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Entry
PG979_000740 CDS
T09987
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rase
Rickettsia asembonensis
Pathway
rase03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rase00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PG979_000740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rase03021
]
PG979_000740
03400 DNA repair and recombination proteins [BR:
rase03400
]
PG979_000740
Enzymes [BR:
rase01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PG979_000740
Transcription machinery [BR:
rase03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PG979_000740
DNA repair and recombination proteins [BR:
rase03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PG979_000740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WCR56683
LinkDB
All DBs
Position
638152..642270
Genome browser
AA seq
1372 aa
AA seq
DB search
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFLKLKQELYEELQTTSSEVKKKKLVKRLKLVEDFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLEKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTIAFDNEVGEGMMFSDLAEMEHALYNK
FITIHTKIKYRRNQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPVSDDPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTAAI
DIFHPVTNDLILSKGELINEAKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYDAEVKIVSRNVV
INSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEV
ITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEVDGRVEFGKDYKSKRRIIIHPIDETMSIEHMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMSQKVEITD
SGGTTLLAGEKIDRHEFEEINEKVIKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKIDKLRGLKENVIVGRLVPVGTGYFMDKMRKAAVKLDEENV
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagtaaatttttacggacaattaagtaatactcaacaatttgatcaaataagg
attaatatagcaagtcctgatcaagtacgttcgtggtctttcggtgaagtaacaaaacct
gaaacaattaactatcgaacctttaaacctgagaaagatggtttattttgtgcaagaatt
tttggtccggtaaaagattatgaatgtctctgcggtaaatataagcggatgaaaaatcgt
ggtattacatgtgagaaatgcggcgttgaagttacggtttctagagtaagacgtgaaaga
atggggcatattgaacttgctgctcccgttgctcatatttggtttttaaagtcactacct
tcaagaattagtacgcttcttgatatgacaatgcgagatgtagaaaagattctttatttt
gaaaattatgtagtagttgacccagggttatcgattttacaaaaaggcgaactcttaaca
gaggaagaattacagaaagcaaaagataagtacggtgaagatgcatttactgcctctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgattttttaaagttaaagcaagaa
ttatacgaggaattacaaaccacttcctcagaagtcaaaaagaaaaaattagtaaagcgt
ttaaaattagtagaggattttttagagtcggaaaataagccggaatggatgattatggat
gttttgccggttattcctcctgaaattagaccgcttgttatgcttgacggcggaagattt
gctacttcggacttaaatgaactttatagaagagtaattaatagaaataatcgtttagag
aaactaatagagtcaaaagctcctgatataatagtcaggaacgaaaaaagaatgttacaa
gaagcagtggatgcgttatttgataacggtcgtcgaggtagagcagcgaaaaatgctaat
aagcgtccatttaagtcattaagtgatatgcttaaaggtaagcagggtcgtttccgtcag
aacctacttggtaaaagggttgactattcaggacgttcggttattgtggttggacctgag
cttaagcttcatcagtgcggtttacctaaaaaaatggcattggagctatttaagccgttt
atttattctaagcttgagttgtacggtattgctacgactattaaagccgcaaaaagaatg
gtggaagctgaaaagcctgaagtttgggatgtgcttgaagaagtcataagagagcatccg
gttttacttaatagagctccgacattgcatagattaggtattcaagcatttgaaccgcta
ttaatcgaaggtaaagcgattcagcttcatccgcttgtttgtgctgcgtttaatgcagac
tttgacggtgatcagatggcggtacatattccgttatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagccctgcaaacggacgtcctattatt
gtaccggataaagatatagtacttggtttatattatctaaccattgcatttgataatgaa
gtaggcgaagggatgatgttctcagatttagctgagatggagcatgctttatataataaa
tttataactattcatacaaagataaaatatcgtagaaatcagctaaatgccgaaggtaaa
atggtccctgttatcattgatactacttacggtaggttaatggtcggtgaattattgcct
tctaaccctaatatagaattcaagtttattaataaacaactaactaaaaaagacatatca
ttagttatagatttagtttatcgtcactgcggtcaaaaagctacagtaatttttgccgat
cagctaatgaaactaggttttaaatatgcttgttcttcaggtatttcttttggaatggac
gatatggtagtaccggaatctaagagtactcatatcaatgaaactcagcttgaaataaaa
gaatttgaacaacaatattcaaacggtttaattacttatggagagaaatacaataaagta
gttgatgcttggtcaagatgtaccgatagagtagcaaacgacatgatgaaagagattgct
acgccgccggttagtgatgatccgaatcatcaaaaaataaatgctatatatatgatggct
atctccggagcaagaggttctttccagcaaattaagcagttaggcggtatgcgaggttta
atgactaaatcaaacggtcaaattatacaaactcctattatctctaactttaaggaagga
ttaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaatagataca
gctttaaaaacagcaagctcaggttacttaacaagaaaattagtagacgttgcacaagat
tgtattattaccgaaaaagattgtggaactgataaagggattgaagttaagagtgttatt
gaagggggagaagttatagtacctttagctgaaaagattttaggtcgtactgctgctatc
gatatatttcatcctgtaactaatgatctaattctcagtaaaggcgagcttattaatgaa
gcaaagttagagcagattgagtcggctggactcgacagaattatgataaaatccgtatta
acctgtgaaagtactaccggtatatgtagcatatgttatggtagggatcttgctaccggt
acgttggtgtcggagggtgaggcaatcggggttattgctgctcaatctatcggtgaaccg
ggtacgcagcttacaatgagaactttccatatcggaggagcggcaacaaaaggtgctgaa
gtttcttccgtagaagcttcctatgacgcagaagtgaaaattgtaagtcgtaacgttgtt
attaattccgaagaacgtaaaattgttatgagccgaaattgtgaattattattacttgat
aataacggtaatgaaaaggctcgtcataaaattccatacggtgctagattacttgttgat
gacggtgatatggttattaaaactcaaaaactagcggagtgggatccttatactataccg
attatcacggagaaatcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgacgtaactgacgaagctactggaataccgagtaaagttattattgaatcaaagcaa
tattcacgcggtgcagaattacgtccgcgtatacagcttttagatgctaaaggtgaagtt
ataaccttatcaaacggtttagaagctagatattacttgccggttggagcagttttaagc
gtagaagacggagtacaaatatctgtaggtgatattattgcacgtataccgaaagaatcg
accactactaaagatattaccggtggtttaccgagagttgccgagcttgtagaagcaaga
cgtcctaaagatcatgcagttattgctgaggttgacggtagagtagaattcggtaaagac
tataaatctaagagacgtattattatacatccaattgatgaaacaatgtctattgagcat
atggtaccaaaaggcaagcatgttgtagttaacgaaggtgactttgttaaaaaaggcgat
ttattgattgacggtaatccagtacttcaagatattttaaaagtaatgggagtagaggtt
cttgcaaattatattgttaaagaggttcaagccgtttatcgtctacaaggtgtaaagatt
gatgataagcacatagaagttattattcgtcagatgtcacaaaaagtagaaatcacggat
tcaggtggaactaccttattagcaggtgaaaaaatagatagacatgaattcgaggagata
aatgaaaaagttattaaaaacggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctgcaaactagatcgtttatctctgcggcatcattccaagagact
actagagttttaacagaagcagctattgccggtaaaatagataagctacgagggctaaaa
gaaaacgtgatagttggacgattagtacccgttggaaccggttactttatggataaaatg
cgtaaagcagccgtaaagcttgatgaagaaaatgtataa
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