KEGG   Rickettsia asembonensis: PG979_001238
Entry
PG979_001238      CDS       T09987                                 
Name
(GenBank) Ribonuclease J 1
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rase  Rickettsia asembonensis
Pathway
rase03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rase00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PG979_001238
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rase03019]
    PG979_001238
Messenger RNA biogenesis [BR:rase03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PG979_001238
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_6 DUF4587 DUF826
Other DBs
NCBI-ProteinID: WCR57181
LinkDB
Position
1092866..1094548
AA seq 560 aa
MSSFNIKNHKNDLLFVPLGGSNEIGMNLNLYHYKGKWLMIDCGSGFADDYLPGVDMIIAD
SSFIEKYKKDIVGLILTHAHEDHLGGVQYLWNNLKCHIYTTTFTANFLKIRLNEYDFSKN
IKIHEVKLGSKINLEPFSLEMVSLTHSAPEMQAVMIRTDAGNILHTGDWKFDNDPVLGKK
ADEELLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLVDIIAGCHQMVVVSTFASNL
ARLDTIIHAAGLAGRKVVLTGRSLHRMMLAAQESGYFKDIAPLISERDVSRFRREELLVI
ATGCQGEPMAATAKLASNSHQSIKLAPNDTMIFSSKIIPGNEKKIFRLFNIFVKAGVEVI
TERDHFVHVSGHPSIDELQKMYSLIRPNICIPVHGEPVHIHEHVKFAKKNGIKQAVEVEN
GSVVLLEPNNAKVISKVENGYLAVDGNYLLTVESPIFKVRRHMRESGIVVASVVINKKGL
LAANPMLSMPGLLDPKEDMALVNLIKNDIKELVTIQNKQAKKALSDEQVIEAIKGTIRKT
LKQEINKSPVIIVNLEKAVE
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgtcatcattcaacatcaaaaatcataaaaatgatctgctatttgtaccgctaggagga
tctaatgaaataggtatgaatcttaatctttaccattataaaggtaaatggttaatgatt
gattgtggtagcggttttgccgatgactacttacctggtgttgatatgataattgccgat
agtagctttatagagaaatataaaaaagatatagtaggtctgattttaactcatgctcac
gaggatcatttaggcggtgtccaatatttatggaataaccttaaatgtcatatttatact
actactttcacagcaaattttttaaagattcgtttaaatgaatatgatttttctaaaaat
ataaaaattcatgaagtaaaactgggtagtaaaataaatctagagcctttttctttagaa
atggtgtcgctcactcactcggctcctgaaatgcaagcagttatgattcgtacggatgca
ggtaatattttacatacgggagattggaaatttgataatgacccggtactcggtaaaaaa
gctgatgaggagcttctaaaatcttatggagatgaaggggttcttgcgcttgtttgtgat
tcaactaacgtatttaataaaggaagctcaggttctgagggagatgttagaaaaagttta
gtagatatcatagccggctgccatcaaatggtagtagtttcaacctttgcttctaattta
gcgcggcttgatacaataattcatgctgcagggctggccggtagaaaagtagttttaacc
ggtagaagtttgcatcgtatgatgcttgctgctcaagaaagcggctatttcaaagatatt
gctcctctaattagtgaacgtgacgttagtagatttagaagagaagaattattagtaatt
gctaccggttgtcaaggcgagcctatggcagcaaccgcaaaattggctagtaattctcac
caatctataaagcttgctcctaacgatacaatgattttttcttcaaaaattattccgggt
aatgaaaagaaaatattcaggctatttaatatatttgttaaagctggtgtagaagttatt
actgaacgtgatcattttgtacatgtttcaggacacccatcgattgacgagctgcaaaaa
atgtattctctaattagaccgaatatttgtatacctgttcacggtgagcctgtacatatt
catgaacatgttaagtttgctaagaaaaacggcataaaacaggcagtagaggttgaaaac
ggtagcgtagtgttgcttgaacctaataatgcgaaagtaatttcaaaggtagaaaacggc
tatttagctgtagacggtaattatttactcactgtagaatctccgattttcaaagttaga
agacatatgcgtgagtcgggtatcgtggtagcatcagtagtaattaataaaaaagggctg
cttgctgcaaacccaatgctgtctatgccggggttgcttgatccgaaagaggatatggca
ttagttaacctcattaaaaacgacattaaagaacttgttaccattcaaaataaacaggct
aaaaaagcattgtcggatgaacaagtaatcgaagcaataaaaggaacaatccgtaaaacc
ttgaaacaggaaattaataaatctcctgtcataatagtaaatcttgagaaagctgtggag
tag

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