KEGG   Riemerella anatipestifer CH3: M949_0553
Entry
M949_0553         CDS       T03250                                 
Name
(GenBank) type i site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
rat  Riemerella anatipestifer CH3
Brite
KEGG Orthology (KO) [BR:rat00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rat02048]
    M949_0553
Enzymes [BR:rat01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     M949_0553
Prokaryotic defense system [BR:rat02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   M949_0553
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 DEAD DUF4145 HSDR_N HSDR_N_2 Helicase_C Terminase_3C COG4_N AAA_19
Other DBs
NCBI-ProteinID: AIH01724
LinkDB
Position
complement(559401..562844)
AA seq 1147 aa
MTTNFAFLKNEFKDLYEHSKSAEQNTFTQPRFCLISCRITLEKAMHWLYDNDEDLHLPYQ
KNLAALMYADDFKNIVKPSMFRELVYIQKIGNRAAHGEKVTAMEALQGLKNLFRFLSWVS
KYYSQEDPEIPPFEERYIPYDTPRETEAQVIQDLENKSRAVLEKEEALIRERQLLEQERE
DLRKEREAYLKLMTERKQERTETYQNVEAVPELTSEKETRRLLIDLMLKEAGWGNLQKGI
NTEYPVEGMPASTNPSGKGFVDYVLWDDNGKPLAVIEAKKASYDAANGKHQASLYADALE
RKFGQRPLIFYTNGYEVYFWDDTFYTPRRVYGFFNKKELQTLIKRRKERSDIRQFQINQN
IAGRPYQLQAIQRVAETLVGEHRGNLRGKSRKALLVMATGSGKTRTSAAMVDMFTKCNWA
KRILFLADRNALVTQAKNAFKEHLPHLSAIDLTQDKDDGTARVVFSTYPTMMNRIDQITS
NGERRFSIGHFDVIIIDEAHRSVYQKYQAIFDYFDAILIGLTATPKKDIDRNTYQLFEIE
DDNPTFAYELDTAVKEGFLVPPKALSVPVKYVREGIKYKELNEKDKAEIETLFGLDSEEN
EDFEISKNKINSSLFNTDTVDKVLSYLMEKGLKVESGDKLGKTIIFAKNHNHAVFIEERF
NKMYPEYGGTFLRVIDNYEDKAQNLLENFCFDKGEEKDPQIAVSVDMMDTGVDAPRVLNL
VFFKEVKSFAKFWQMIGRGTRKCPDIFGKDQDKEFFLIFDICGNFEYFDEFPDGYQPSQT
QSLQSRLFDIQLDIMFHLQQQSEKTLSALALEQEYLQQLQAKVQQLDEQRFEVRKHWEIV
RKYKEASAWVQLSRSALLELYGISHLVSYTEDKDEMAKKFDLLLFNLNLALVTSDKKQKN
YIANVMNFGQLLGKKFNIPIVKQREGIIKDIQTDAFWHSVDLATVEQIRTELREVVKVLR
DEDKEKPIYTTIEDELNVSEVREMDLLENYTSLQSYKDRVEHFIRKNKHHLVIDKLYKNI
PITPSELKSLEDFLVHQKFNLSDIEKEYETKSLGLFIRKVLGLDIQAANAHFARFIQEEN
LTADQMLFVEKIIHYLNKNGILDKQMLTKPPFNDQYDNGILGVFEEKTQVMKIIGLVDEI
SKNAGVA
NT seq 3444 nt   +upstreamnt  +downstreamnt
atgacgaccaactttgcttttctaaaaaacgaatttaaagacctctatgagcatagtaaa
agtgcggagcaaaacacctttactcagcctagattttgtttaatttcttgtcgcattacg
ctagagaaagcaatgcattggctttatgataacgatgaggatttgcacttgccttaccaa
aagaatttggcggcactcatgtatgcagacgattttaaaaacatcgtaaagccctctatg
tttagagagttggtgtacattcaaaaaataggtaatagggcggcacatggcgaaaaagta
accgcaatggaagccttacaagggctgaagaatttgtttcgttttctttcttgggttagc
aaatattatagccaagaagacccagaaattcccccttttgaggaacgctacattccttac
gatacacctagggaaacggaagcccaagttatacaagatttagagaataaaagccgagca
gtcttagaaaaagaagaagctctgataagagaacgccaactgctagagcaagaaagggaa
gacctaaggaaagagcgagaggcttatctaaaactgatgaccgagcgtaagcaggaaaga
accgaaacttaccagaatgtggaggcggtgccagaacttacttccgaaaaagagactcgc
cgtttgcttatagaccttatgttgaaagaagcaggttggggaaatttacaaaaaggcatc
aatacagaatatcctgtggaggggatgcctgctagtaccaacccatcgggtaagggtttt
gtagattatgtcttgtgggatgataacggtaaaccattggctgtgatagaagcgaaaaaa
gccagctatgatgctgccaacggaaaacaccaagctagcctttacgccgatgctcttgaa
aggaaatttgggcaacgccctcttattttctataccaatggttatgaggtttatttttgg
gacgatactttctacacgccacgcagggtgtatggtttctttaataaaaaagaattacaa
actcttatcaaacgaagaaaggagcgtagcgatattcgtcagtttcagataaatcagaat
attgcgggtcgtccgtatcagctccaagctatccaaagagtggcagaaactttggtggga
gaacacagaggcaatctaagaggtaaaagccgaaaggcactcctagtgatggctacagga
agcggaaaaacccgtacttctgccgctatggtagatatgtttactaagtgcaattgggca
aaacggattctgtttttggcagataggaacgcattggttacacaggcaaaaaatgcattt
aaggaacatttgccacacctttcagccatagatttaacacaagataaagatgatggtacg
gctcgtgtggtattttccacttaccctactatgatgaaccgtatagaccaaataacaagc
aacggcgaaagacggtttagcatcggacatttcgatgtgattatcattgacgaagcccat
cgttcggtctatcaaaaataccaagcgatttttgattattttgatgccatacttattggg
ctcacagcaacgcctaaaaaggatattgatagaaacacctatcagctttttgagatagaa
gacgataatcccacctttgcttacgagctagacaccgctgtgaaagaaggctttttagta
ccacctaaggctttgtctgttcccgtgaaatatgtgagagaagggataaaatacaaagag
ctaaacgagaaagataaagcagaaatagaaactctttttgggctagatagcgaagagaat
gaagattttgaaattagcaaaaataagattaactcatcactttttaataccgatacagta
gataaagtattgtcctaccttatggagaaagggttaaaggtagagtctggtgacaaacta
gggaaaaccattattttcgctaaaaatcataatcacgctgtttttatagaggaacgattt
aataaaatgtaccctgaatacggaggaacttttctgcgtgtgattgataactacgaggat
aaagcccaaaacctattagagaatttttgctttgataaaggcgaagaaaaagatcctcaa
attgcggtttcggtggatatgatggatactggagtagatgctccaagggtattgaatttg
gtcttctttaaagaagtgaaatcctttgctaaattttggcaaatgatagggcgaggtaca
agaaaatgccctgatatttttggtaaagaccaagataaagagtttttcttaatctttgat
atctgtggtaattttgaatattttgacgaattcccagatggttatcagcctagccaaact
caatctttgcaatcccgattgtttgacatacagttagatattatgtttcacctgcaacaa
caatcagaaaaaacattatctgctttggctttagaacaagagtatttgcaacagttgcaa
gctaaggttcagcaattagacgaacagcgttttgaggtaaggaagcattgggaaatagtc
cgaaagtataaagaggcttctgcttgggttcagctatctcgttcggcactgctagagctt
tacggtataagccatctagtttcctatactgaggataaagatgaaatggctaaaaagttt
gatttattgctttttaatctcaatctagcgttggttacttcggacaaaaaacaaaaaaac
tacattgccaatgtaatgaattttggacaattactaggcaaaaaattcaatatcccaatt
gtaaaacaaagagagggaattataaaagacatccaaacggatgctttttggcattcggta
gatttggctaccgtagagcagattcgtaccgaactgagggaagtggttaaagtacttaga
gatgaggataaagaaaaacctatctacaccactattgaagatgaactaaatgtgagtgag
gtaagagaaatggatttgctagaaaactacacttctctacaaagctataaagaccgtgtg
gaacattttattaggaaaaataagcaccatttggttattgataaactttacaaaaacatt
ccgattacgcctagcgaactaaagtctttggaggatttcttggtacatcaaaaattcaat
ctcagcgatatagaaaaagagtatgaaacaaagtctttagggcttttcattcgtaaagtt
ttagggttagacatacaagcagctaatgcccactttgctcggtttatacaagaagaaaac
ttaactgccgaccaaatgttgtttgtagaaaaaatcattcattaccttaacaaaaacgga
attttagataaacaaatgcttaccaaacctccgtttaacgaccaatatgataacggcatt
ttaggtgtttttgaggagaaaacacaggtaatgaagattataggtctagtagatgagatc
tccaaaaatgcaggagtagcatag

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