Riemerella anatipestifer CH3: M949_1738
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Entry
M949_1738 CDS
T03250
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rat
Riemerella anatipestifer CH3
Pathway
rat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M949_1738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rat03019
]
M949_1738
03016 Transfer RNA biogenesis [BR:
rat03016
]
M949_1738
Enzymes [BR:
rat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
M949_1738
Messenger RNA biogenesis [BR:
rat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M949_1738
Transfer RNA biogenesis [BR:
rat03016
]
Prokaryotic type
tRNA degradation factors
M949_1738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_2
S1_RRP5
KH_SLS1_2
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AIH02905
LinkDB
All DBs
Position
complement(1785936..1788071)
Genome browser
AA seq
711 aa
AA seq
DB search
MNAPQAITETILLKDGREITIETGKLAKQADGAVVVKMGGTMLLATVVAAKEANPGVDFL
PLTVDYREKFGAAGRIPGNFFRREAKPSDDEVLTMRLVDRVIRPLFPSDFHAEVQVMISL
ISYDEKVMPDSLAGLAASAAIAITDIPFNGPFSEVRVIKKDGVLSINPSWETLQSGVELD
IMVGATKDSIVMVEGEMDEITEQEMLEAITFAHQEIKTQVEAQERLAQKVGKAFPKREYC
HETHDEELKKQIWDYAYQKYYDIAKNPSAKEERGEKFSAVVEEFLAQYTEEELEEKADLA
KVYFHDVQKEAVRQLILNENIRLDGRNNQQIRPIWSEVDYLPAAHGSSVFTRGETQSLTT
VTLGSLMDANRIDSVITQHDERFYLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALKV
MIPEETPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIPMRKPVSGIAMGLITDKESG
KWTVLSDILGDEDHLGDMDFKVTGTENGITACQMDIKIQGLTMDIMEQALMQAKNGRLHI
LGEMLKTISEPRADVKPHAPKMVMMEIPKDFIGAVIGPGGKVIQQMQKETGTVITIEEKG
EIGYIEISGTDREKINAAIAQINEITFIPIVGEVYQGKVVKVMDFGAFVQLAKGTEGLLH
ISEIDWKRTDKVPYKEGDVVEVKFMGYDDRKKMKLSRKVLLPKPPREEKSK
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaccacaagcaatcaccgaaaccattctgctgaaagacggcagagaaatcact
attgaaacaggtaaattagctaaacaagctgatggagccgtagttgtaaaaatgggaggc
actatgctattagcaacggtagtagccgctaaggaagctaatcctggcgtagatttcttg
cctcttactgtagattatagagaaaaatttggagcagcaggaagaatcccaggtaacttt
ttcagaagagaagctaaaccttctgatgatgaagtcctcacaatgcgtctagtggacaga
gttatcagaccattattccctagcgatttccatgcggaagttcaagtaatgatttctctt
atctcttacgacgaaaaagtaatgccagactcattagctggtcttgctgcatcagccgct
attgcgattacagatattcctttcaacggaccattttcggaagttagagtcatcaaaaaa
gacggcgttcttagcatcaatcctagctgggaaactttacaaagtggcgtggaactagat
attatggtaggagctactaaagactctatcgtaatggtagaaggtgagatggacgaaatt
accgagcaggaaatgctagaagctattacttttgctcatcaagaaattaaaacacaagta
gaagctcaagaaagattggctcaaaaagtgggcaaagccttcccaaaaagagaatattgc
cacgaaacccacgatgaagaattaaaaaaacaaatctgggattacgcttaccaaaagtat
tacgacattgctaaaaaccctagtgcaaaagaagaaagaggagagaaattctccgcagta
gtagaggaatttttagcacaatatacagaagaagaattagaagaaaaagcagatttagct
aaagtttacttccacgatgtacaaaaagaagctgtacgccaacttatcttaaacgagaac
atacgtttagatggaagaaacaaccaacaaattcgtcctatttggagtgaagtagattat
cttcctgccgcacacggttcttctgtatttactagaggcgaaactcaatcgcttactacg
gttactttaggctctcttatggacgctaacagaattgacagcgttatcactcaacacgac
gaaagattttatctacattataacttcccaccattttcaacaggtgaagctagaccactt
agaggtacgtctagaagagaagttggacacggtaacttggctcaaagagctttaaaagtg
atgattccagaggaaacgccatatactattcgtattgtttcggacattttagaatctaat
ggttcgtcttctatggctacggtatgtgctggtacactagcgcttatggatgcaggtatc
ccgatgagaaaacctgtttctggtatcgctatggggcttattaccgataaagagtctgga
aaatggacggtactatctgacatcttgggcgacgaagaccacctaggagatatggacttt
aaagtaactggtacagaaaacggtatcacagcttgtcaaatggacattaaaatccaaggg
cttacaatggatattatggagcaggctctaatgcaggctaaaaacggaagacttcatatc
cttggggaaatgcttaaaacaatttctgaacctagagcagatgttaagcctcatgcacct
aagatggtaatgatggaaatccctaaagacttcattggtgctgtaataggacctggtggt
aaggtaatccagcagatgcaaaaagaaacaggcactgtaattaccatagaggaaaagggt
gaaataggctacatagaaatatctggaactgatagagaaaagataaatgcagctatcgct
caaatcaacgaaatcactttcattccaatagttggagaagtttaccagggtaaagtagta
aaagtgatggactttggtgctttcgttcagctagctaaaggtacagagggacttttacac
atttcagagattgattggaagagaaccgacaaagtaccttacaaagaaggagatgtggta
gaagtgaaatttatgggatacgatgaccgtaagaaaatgaaactttctagaaaagtactc
ctcccaaaacctccaagagaagagaaatctaaataa
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