Riemerella anatipestifer CH3: M949_1740
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Entry
M949_1740 CDS
T03250
Name
(GenBank) DNA polymerase iii, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rat
Riemerella anatipestifer CH3
Pathway
rat03030
DNA replication
rat03430
Mismatch repair
rat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M949_1740
03430 Mismatch repair
M949_1740
03440 Homologous recombination
M949_1740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rat03032
]
M949_1740
03400 DNA repair and recombination proteins [BR:
rat03400
]
M949_1740
Enzymes [BR:
rat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M949_1740
DNA replication proteins [BR:
rat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M949_1740
DNA repair and recombination proteins [BR:
rat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M949_1740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
DNApol_Exo
Motif
Other DBs
NCBI-ProteinID:
AIH02907
LinkDB
All DBs
Position
1788730..1793382
Genome browser
AA seq
1550 aa
AA seq
DB search
MYLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDEEGNLVENQDYIIKPEGYDIPF
NATRIHGISTKMAHEQGRDLVEVLEEFREVLKKTKIVAGHNIEFDYNIVGAEFYRKSIEN
VLEKIPSADTMALGTDYCQLGGGRNGKYKPPKLEELYEKLYGEKFDEAHNAAADVNATAQ
VFFEMMRVGIIPAETLKISEEQLKVYQENHPSPIRPFAIVIRRQVEDFNKKKKRTDFGDI
SEIELGDYFNFHNHSIFSSLQSTTSIGDLIDKAKNNQFPAVGMVDLGNMMGAFKFVSDVE
KYNSGVKKAHQEYLVNKQKAEEEGADFNENAPESKELMAVLGCEFYISDRPEQKQFTKDD
PDRRTNVVLLAKNFNGYKNLAKLSSLGYVNGFYFGVPRVSREMVAQYKEDVIAVTSGIYG
DIPDAILNFGEQKGEERFKWWKETFGGDFYVQLQNHGLQEEEHLNEVLLDFADKYDVKIL
AQNETFYTDKSDANIQDIVSCIKDGEKLSTPVGKGFGKRKGLRSQEFYIKDAEELKQCFR
QYPDAFEAYTELLSKFEPYTLKRDVLLPKFDIPKEFQSEEDLKDGGKRGENAYLRYLTYE
GAKKRYDEITDDIRERLDFELEIIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAAGS
AVAYCIGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDRIIKWVIDKYGKSNVA
QIITYSVLGGKSAIKDAGRVLDVPIPETNNIAKLVPSVPGMNIAKALSKYDKLKDEDKVL
VDEMKAVLDNPNDQRFPVLDSAKKMEGCIRNTGIHACGVIITPEDISNLVPISIAAKDAD
ILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKERHGIDINPDEISLDDAKTYQL
FKEGRTIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGIEEI
IYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMYPK
FIEGGKKNNLDEEKLNKIWNDWKAFAEYAFNKSHSTCYALIAYQTAFLKANYPAEYMASV
MSNNINNTAQITMFMEDCRAMGVDVLGPDVNESQYKFSVNDKGQIRFGLGAIKGIGEGPS
EAISQERVKGKFKNIYDFFERVTPSQVNKRVVESLVMAGAFDEVDTYHRAQYFDIDNSGK
TNIEKLIRYGQSFQESKNEVENSLFADFAEEIQIEQPKIAPAMEWQNMHKLNKEKEIIGF
YLSAHPLDEYKYQFRFIQGELSKKEVLSQKDEILEELQSIPKESVLIEDTEDEPDLAVDL
DLVEGEDGEIMEEEVKNVEPKGSFNFLNLDEVEAFKDSIAGSINPNLFSEKEAWKELRKI
NDAAKEYTVAGLITEYTIRDGKNSGEKIAFLTLEDYSGSYGFRLGDRDYMRLREKLALQR
FVIVKIKMVISKDGRVFVNINEVIDLKDAFEKYAKSLSIVADITDIRRADIDFFQNDLLS
HQGEHKLSFYLKNPNDETELELPSIQKKINISAELLYKIQQYNKYQIFLN
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atgtatcttatttttgacacggaaactacgggattaccaaagaattttaatgctccatta
tcagattcggataactggccgagaatggtgcagattgcttggcagttgcacgatgaagag
ggtaatttagtagaaaatcaagactatatcatcaagccagagggttatgatattccgttc
aatgctactaggatacacgggatttctactaaaatggctcacgagcaggggcgagatttg
gtggaagttttagaagagtttagagaagtcctaaaaaaaacaaagatagtcgctggacac
aatattgagtttgattataatattgtgggggcggaattttatagaaagtccatagaaaat
gtgttagaaaaaattccgtcagccgatactatggcacttgggacagactactgtcagctt
ggaggaggtagaaacggaaagtataaaccgcccaaattggaggagctttacgaaaaactc
tatggtgaaaaatttgatgaagctcacaatgctgctgccgatgtaaatgccacggcacaa
gtcttttttgaaatgatgcgtgttgggattattcctgcggaaacgcttaaaatttcggaa
gagcagcttaaggtttatcaagaaaaccacccgagtcctattcgtccgtttgcgattgtt
atcaggaggcaagtagaggactttaataaaaagaaaaaaagaaccgattttggcgatatt
agtgagattgaactcggtgattatttcaattttcataatcatagtatcttttcatcttta
caatctaccacttccataggagatttaattgataaggctaaaaataatcagtttcctgct
gttggtatggtagatttaggcaatatgatgggggctttcaaattcgtttctgatgtagaa
aaatacaattctggcgttaaaaaagctcatcaagaatatttagtaaataaacaaaaagcg
gaagaagaaggtgcggatttcaatgaaaatgcaccagaatctaaagaacttatggcggta
ttgggttgcgaattctatatttctgaccgcccagagcaaaaacaatttaccaaagacgac
cctgacagaagaactaatgttgtacttctcgctaaaaactttaatggttataaaaattta
gcgaagttgtccagtttagggtatgttaatggtttttattttggtgtacctagggtgtct
agggagatggtggcacagtacaaagaagacgttattgcggtaacatcgggtatttatgga
gatattccagatgctattttgaattttggtgagcaaaaaggagaagaacgatttaagtgg
tggaaggaaactttcggtggggatttttatgttcagcttcaaaatcacggtttgcaagaa
gaggagcatttgaatgaggttttgttagattttgcagataaatacgatgtgaaaatttta
gcccaaaatgaaactttttatactgataaatctgatgctaatattcaagatattgtaagt
tgtatcaaagatggcgaaaagctatccacaccagtagggaaaggctttggcaagagaaaa
ggcttaaggtcgcaagagttttatatcaaagatgcagaggaacttaagcagtgctttaga
cagtatccagacgcttttgaggcttatacagaattgttgtcaaaatttgaaccttatact
ctaaagagagatgttttgttgcctaagtttgatattccaaaagagtttcaatctgaggaa
gatttgaaagacggtggcaaaaggggagagaatgcctatctgcgataccttacctatgaa
ggagctaagaagcgttatgatgaaattacagatgatataagagaaaggctagattttgag
ctggaaattattgctaatacaggctatccagggtatttcttgattgttcaagatttttgt
aacgaagctagaaagatgggggtatgggtaggtcctggtaggggttcggcggcaggttcg
gcggtggcttattgtattgggattaccaatgtagaccctataaaatacgacctccttttt
gagcgttttctaaatcctgaaagaatttcaatgcctgatattgatattgattttgatgat
gagggaagagatagaattattaaatgggttattgataaatacggtaaatctaatgtagca
cagattattacctactctgttttgggtggaaagtcggcgattaaagatgcgggtagggtg
ctagatgttcctattccagaaaccaataatattgcgaaacttgtaccttctgtaccagga
atgaacattgctaaggctttatctaaatacgacaaacttaaagatgaagataaagttttg
gttgatgaaatgaaggcggttttagacaatcctaacgaccagcgctttcctgtgttggat
tcggcgaaaaaaatggaaggttgcattagaaatacaggaatccacgcttgtggggtgatt
attacacctgaagatatttctaatttggtgcctatctcgatagcggctaaagatgccgat
attttggtctctcagtttgataactcggtggcagaaagtgcggggcttttaaaaatggac
tttttagggctgaggactttaactatcattaaagatgctcttaaactcgtgaaagaaagg
cacggtatagatattaacccagatgaaatttctttagatgatgctaagacttatcaactt
tttaaagagggaagaaccatagggattttccaatacgaaagccctggtatgcaaaaatat
atgagggaattaaagcctaccgtttttgcggatttaattgcgatgaatgctttgtatcgt
ccaggaccaattaagtatattcctaactttatcaatcgtaaacacggcattgaagaaatt
atttacgacctcccagagaccgaagaatatcttaaagaaacttatgggattaccgtttat
caggagcaggtaatgcttttgtctcaaaaattggcaaactttaccaaaggtgaagcggat
actttgaggaaggctatggggaaaaagcagatagatgttcttaataagatgtatcctaaa
tttatagaaggtggtaaaaagaataatctggacgaagaaaaactcaataaaatttggaac
gattggaaggcatttgcagaatatgcatttaacaaatctcactctacttgttatgcactt
attgcttatcaaacggcgtttttaaaggcaaattatccagctgagtatatggctagcgta
atgagtaataacattaacaacacggcgcaaatcacaatgtttatggaagattgtagagct
atgggcgtagatgttttaggaccagatgttaatgaaagtcagtataaattttcggtgaat
gataaagggcagataaggtttggtttaggagcgataaaggggattggcgaaggtcctagt
gaagcgattagccaagaaagagtgaaaggaaaatttaaaaatatctatgacttctttgaa
agagtaacaccatcacaagtgaataaaagagtggtggagagtttggtaatggcgggagcg
tttgatgaggtagatacctatcatagagcacaatattttgatattgataactcaggcaag
actaatatagagaagctcattagatacggacaaagtttccaagaaagtaaaaatgaggtg
gaaaactctctttttgcggattttgcagaagagatacaaatagaacagcctaaaatagca
cccgctatggagtggcagaatatgcataaacttaataaagagaaagaaattattgggttc
tacttatcagctcaccctttagatgagtataaatatcagtttcgctttatacaaggtgag
ttgagtaaaaaagaggttttatctcaaaaagatgaaatcttagaagaattgcaatctatc
ccaaaagaatcggttttaatagaagatacggaagatgaaccagatttggcggtagacttg
gatttggtagaaggtgaagatggtgaaataatggaggaggaagttaaaaatgtagagcct
aagggtagttttaattttttaaatttagatgaagtagaagcctttaaagatagtatagcg
ggtagtatcaatcctaatttattctccgagaaagaggcgtggaaagaactaagaaaaatt
aatgatgcggctaaagaatataccgtggcagggctaattacagaatataccataagagat
ggtaaaaatagtggagaaaaaattgcatttttaactctagaagattatagtgggtcgtat
ggttttcgtttgggagatagagattatatgcgtcttagagaaaagttagctttacaaaga
tttgtgattgttaagataaaaatggtaatttctaaggacggtagagtttttgtgaatata
aatgaagtgatagaccttaaagatgcctttgaaaaatatgcaaaatcactatctattgta
gcagatattactgatattagaagggcggatattgatttctttcaaaacgatttactctct
catcaaggagagcataagttaagtttctatcttaaaaatcctaacgatgaaacggagcta
gaattaccatcaatacagaagaaaatcaacataagtgcagaacttttgtataaaattcag
cagtataataagtatcagatatttcttaactaa
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integrated database retrieval system
