KEGG   Riemerella anatipestifer CH3: M949_1925
Entry
M949_1925         CDS       T03250                                 
Name
(GenBank) putative DNA polymerase III
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
rat  Riemerella anatipestifer CH3
Pathway
rat03030  DNA replication
rat03430  Mismatch repair
rat03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rat00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    M949_1925
   03430 Mismatch repair
    M949_1925
   03440 Homologous recombination
    M949_1925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rat03032]
    M949_1925
   03400 DNA repair and recombination proteins [BR:rat03400]
    M949_1925
Enzymes [BR:rat01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     M949_1925
DNA replication proteins [BR:rat03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     M949_1925
DNA repair and recombination proteins [BR:rat03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     M949_1925
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA DNAX_ATPase_lid DNA_pol3_gamma3 AAA_22 RuvB_N AAA_14 AAA_5 AAA_30 AAA_7 Rad17 RCF1-5-like_lid AAA_16 TIP49 nSTAND3 DEAD AAA_24 DNA_pol3_delta_C AAA_2 AAA_18 AAA_assoc_2 ABC_tran RNA_helicase DUF815 GNAT_acetyltr_2 Mg_chelatase DEXQc_Suv3 SRP54 AAA_33 NPHP3_N RsgA_GTPase TsaE Sigma54_activ_2 DUF7375
Other DBs
NCBI-ProteinID: AIH03092
LinkDB
Position
1963958..1965061
AA seq 367 aa
MENFIVSARKYRPQEFDTVVGQSHITDTLEHAIAENQLAQALLFCGPRGVGKTTCARILA
RKINEKDGAMSEDGFSYNIFELDAASNNSVDDIRELTDQVRYAPQVGKYKVYIIDEVHML
SSQAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKRITIEDIQAHLRKIA
DKEGINYEDDALFLIAQKADGALRDALSIFDRLVTFTQKNITLAKAAEVLNILDYDQYIK
IVDLIHANDIPNVLVAFNEIVKKGFDPHIFIAGLGNHYRDLMMAQNSSTLNLIEVGEKTK
AKYAEQSQKWTAQQLVDAIEICNYADINYKSSKNPRLTVEIALMQLASLTQGIEGAKKKV
SDFSTSR
NT seq 1104 nt   +upstreamnt  +downstreamnt
atggaaaatttcatagtatctgcgagaaaatatcgtccacaagagtttgacactgttgtg
gggcagtcgcatatcacagatactttggagcacgccattgccgaaaaccagttggctcag
gcattgttattctgtggtcctcgtggcgtaggtaaaacaacttgtgcaaggattttagcc
agaaagattaacgaaaaagacggcgctatgagcgaagatggtttttcttataatatcttt
gaactagatgccgcgtctaacaactctgtagatgatatacgagaacttaccgaccaagtg
cgttatgcaccgcaagtaggcaagtataaggtatatattatagatgaggtgcatatgttg
tcttcacaggcatttaatgcatttcttaaaactttagaagagccacctgcacacgctatt
tttattttagcaactacggagaaacacaaaattatccctaccattttgtctagatgtcag
atttatgacttcaagagaattactatagaggatatccaagcacaccttagaaaaatagca
gataaagaaggtattaactacgaagacgatgctcttttccttattgctcaaaaggcagat
ggagctcttagagatgcgttgtctatttttgatagattggtaacatttacccaaaagaat
attacacttgctaaagcagcggaggtgcttaacattttggattatgaccaatacatcaaa
atagtagatttaatccacgctaatgatattcctaatgttttggtagcattcaacgaaatt
gtgaaaaagggttttgaccctcatattttcattgctggattgggaaatcactaccgagat
ttaatgatggctcaaaattcatctactttaaacttgatagaagtaggtgaaaaaacgaaa
gccaaatatgcggaacaaagccaaaaatggacagctcagcagttggtagatgcaatagaa
atttgcaactatgcagacatcaattacaagagttccaaaaaccctcgtcttacggtagaa
atagccctaatgcaactggctagccttactcaagggatagaaggagctaaaaaaaaagtt
tctgattttagcacctctcgttaa

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