Riemerella anatipestifer CH3: M949_1988
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Entry
M949_1988 CDS
T03250
Name
(GenBank) dead/deah box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rat
Riemerella anatipestifer CH3
Pathway
rat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M949_1988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rat03019
]
M949_1988
Enzymes [BR:
rat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M949_1988
Messenger RNA biogenesis [BR:
rat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M949_1988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UTP25_NTPase-like
UvrD-helicase
CMS1
DsrH
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AIH03155
LinkDB
All DBs
Position
2029404..2030519
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AA seq
371 aa
AA seq
DB search
MNFTQLSLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLL
QILSETPKKGKSIRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALN
QGVDILIATPGRLLDLMQQGLLSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQT
LFFSATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTNLLINILKDT
SELRSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLIATD
IAARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGAEERKDLKNIQRL
IGFTMTTAPAI
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgaattttacacaattatcattatcaagccctattttaaaggcaatatctgacgctggt
tacacaacccctactgcaattcaagaaaaagcaattccaaccattttagaaggtagagac
cttatagggtgtgctcaaacaggtactggtaaaacagctgctttctcaattccattattg
caaatattgtcagaaacacctaaaaaaggcaaatctattagagcgttgattttaacacca
acaagagaactggctattcaaattcaagaaaatatagaacagtatagcaagtttttgaat
ataaaacatctgtcaatttttggaggagtacctcaagggaaacaagaaagagccttgaac
caaggcgtagatattttaatagcaactccagggcggttattagacctaatgcaacaagga
ttgcttagcctatctcaaatagaaattttagttttagacgaagccgaccgtatgctagat
atgggatttgtaaacgatgttaaaaaaatccttaccaaagtgcctaagaaaagacaaacc
ttatttttctcggctacgatgcctaattctataagacaatttgcagaaactatcttagat
aaccccgctgaagttacagtaactccagtatcttctacggctaaaacaatagaacaatcc
gtttattttgtagaaaaaaatgataaaaccaacctactgataaatattttaaaagataca
tcagagctaaggtcgcttatttttacaagaaccaaacacggggcagatagattagtaaaa
caattaggtagaacaggaatttttgcagcagcaatacacggcaacaaatctcaaaacgcc
cgtcaaaaagcacttaaagattttaaagataaccgtatcagtgtcttaatcgctacagac
atcgctgccagagggatagatatagatgagctaccacaggtaattaactacgagcttccc
aatgtgccagaaacttatgtgcatagaataggtagaacaggtagagcaggaacttcagga
aacgccatttcgttttgtggagcagaagaaagaaaagatttgaaaaatatacaaaggcta
ataggtttcactatgaccaccgcacctgcaatctaa
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