Riemerella anatipestifer CH3: M949_2141
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Entry
M949_2141 CDS
T03250
Name
(GenBank) dead/deah box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rat
Riemerella anatipestifer CH3
Pathway
rat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M949_2141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rat03019
]
M949_2141
03009 Ribosome biogenesis [BR:
rat03009
]
M949_2141
Enzymes [BR:
rat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M949_2141
Messenger RNA biogenesis [BR:
rat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M949_2141
Ribosome biogenesis [BR:
rat03009
]
Prokaryotic type
rRNA helicases
M949_2141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIH03307
LinkDB
All DBs
Position
2186214..2187878
Genome browser
AA seq
554 aa
AA seq
DB search
MNLFSESNLSPEILKAVGEMGFETPTEIQKQSIPFILSDVRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQIAKDIKNYSKYQPNIKSVAVYGGSSITDQIRSLR
DKPQVIVGTPGRVIDLINRKALDFSSIHWLVLDEADEMLSMGFKDDLETILSETPETKQT
LLFSATMNKEVERISKSYLTNPHRISVGSINAVKKNISHEYYVVNYRQKKEALKRLIDAN
PNQYSIIFCRTRMEAKEVADYLMQNGYAADALHGDLSQAQRDTVMLKFRLKNIDILVATD
VAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEETRKLKHIKVQ
TQIELKEKSIPKGEDIIKAQVAGVFEHLFTEHETYFDFDDSLIPDLSQFSKEELVHQLLQ
FQLRDLALYYKNRNDLSDQKLKKEGDIKESRREGRRDKGERSRDRGGRKGKKSNSDMVRF
FFNLGKRDQLKKVDMLDIINKSTKKSKKRADIGDIEILDKFTFFEVEKSFKNEILNNISS
MKFKGKEMRAEVAN
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttagcgagtccaatttaagtcctgaaattcttaaggcagttggcgaaatg
gggtttgaaactcctacggagatccaaaaacaaagtattccttttattttatcagatgtt
agagatctgatagcactagcgcaaacaggaacagggaagacagcagcgttttcattacct
atcttagatatgatagatgacactagtagaaaaatccaacttttggtactttgtcctact
agagagctttgcttacaaatagcaaaagacataaaaaattactccaaatatcaacctaat
attaaatctgtagcagtttacggtggtagtagtattacagaccaaattcgtagccttaga
gataagcctcaggttattgtaggaacaccaggtagagtaatagacctaattaacagaaag
gcattagacttttcaagtatccattggctagtattagatgaagcagatgagatgctttct
atgggctttaaagacgatttagaaaccattctaagcgaaacaccagaaaccaaacagact
ttactcttttcagcgacgatgaataaagaagttgaaaggatttctaaaagttaccttacc
aatcctcatcgtatttctgtaggttctatcaatgctgttaagaagaatatcagccacgaa
tattacgtggtaaactatagacagaagaaagaagcacttaagcgccttatagatgctaat
cctaatcaatattccattattttctgtcgtaccagaatggaagctaaagaagtagctgac
tatctaatgcagaatggctatgccgctgatgctttacatggagatttatctcaagcacaa
agagatacagtgatgctgaagtttagacttaaaaatattgatattttagtagctacagat
gtggcggctagagggttggatgtggactcacttactcatgtgattcactactctttacct
gatgatcctgaagtttttgttcatagaagtggtagaacggggcgtgcagggaaagatggt
atttctatggctcttataaagcctgaagaaacaagaaagctgaaacatattaaagttcaa
acacaaatagaacttaaagaaaaatcaatccctaaaggagaagatatcattaaagcccaa
gtagcaggagtatttgagcatttgtttacagaacatgaaacttattttgattttgatgat
agtcttattcctgatttatcgcagttttcaaaagaggaactggtgcatcagttgttacaa
tttcagttgagagatttagctttatactataaaaataggaacgacttatcagaccaaaaa
ttaaaaaaagaaggtgatatcaaggaaagccgtagagagggtagaagagataagggagaa
agaagtagagatagaggaggaagaaaaggtaaaaaatccaattctgacatggtaagattt
ttctttaatttaggaaaaagagaccaattaaagaaagtagatatgttggatattattaat
aaatcaactaaaaaatccaagaaaagagctgatattggggatattgaaattttggataag
ttcacattctttgaagtagagaaatcattcaaaaacgaaatccttaacaacatttcttct
atgaaatttaaaggcaaagaaatgagagctgaagtggctaattaa
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