Riemerella anatipestifer CH3: M949_2182
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Entry
M949_2182 CDS
T03250
Name
(GenBank) Excinuclease ATPase subunit
KO
K03701
excinuclease ABC subunit A
Organism
rat
Riemerella anatipestifer CH3
Pathway
rat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M949_2182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rat03400
]
M949_2182
DNA repair and recombination proteins [BR:
rat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M949_2182
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M949_2182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
SMC_N
UvrA_DNA-bind
nSTAND1
AAA_29
AAA_16
RsgA_GTPase
nSTAND3
DnaJ_CXXCXGXG
AAA_21
AAA_25
AAA_15
ATPase_2
BCA_ABC_TP_C
Motif
Other DBs
NCBI-ProteinID:
AIH03348
LinkDB
All DBs
Position
2225934..2228759
Genome browser
AA seq
941 aa
AA seq
DB search
MMKNRDFIEVYGAREHNLKNIDVKIPRNELVVITGLSGSGKSSLAFDTIFAEGQRRYIET
FSAYARQFLGGLERPDVDKIEGLSPVIAIEQKTTNKNPRSTVGTVTELYDFLRLLFARVS
TAYSLETGKKLQSYTEEQILETIKEQYQNEKVLLLAPLVKARKGHYHELFVQLAKKGYSQ
ARIDGTLQDIEYDLKLDRYKTHDIEVVIDRWIIGETASEARMQKSLSTALQMGGGVVMVQ
KYNSEEFQYFSKDLMDTATGQALPLPEPNTFSFNSPKGSCPHCKGLGTVKKINPDYLVTE
PTLPFQSALLPLETYKFSKWALSQIKSILELFELSLLTPFNKIPKEALDYIYYGCEKEFV
KDLKHAGISKKTKINFEGLIPHLEKVIEDKENYGATQVEREFTVEEICTDCNGTRLKPES
LAFKIEGKTIAEVNAMSLLDLKDWLSEIKNSFSEKNKIIAHEILKEIETRLGFLLDVGLE
YLSLSRSSKTLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNERLINSLKSLRD
LGNSVLVVEHDKDMILEADEVLDIGPKAGKYGGKVLWQGSPKDLIKADTITADYLTGRRK
IEIPEKRREGNGNSIVLKGATGNNLKNVTLKIPLGKMVVVTGISGSGKSSLINGTLYPIL
NRHFYRAVQEPLPYKKIEGIEHIDKIVDVDQTPIGRTPRSNPATYTGVFSDIRTLFANLP
ESKIRGYKAGRFSFNVKGGRCETCQGGGLKVIEMNFLPDVYVHCETCNGKRFNRETLEVR
YKGKSISDVLDMTIDEAVEFFQPIPKIYSKVKTLQEVGLGYITLGQQSTTLSGGEAQRVK
LATELSKKQTGKTLYILDEPTTGLHFEDVKILMEVIQKLVDLGNSFIIIEHNMDVIKLAD
HIIDVGPEGGKNGGSIIAEGTPEEIIKNKKSITGKFLKKEM
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaaatagagatttcatagaggtctatggtgctagagagcataacttaaaaaac
attgatgttaaaattcctcgtaacgagttagtcgttattacagggctatcaggaagtggg
aaatcttctttagcatttgatactatttttgcagaaggacaaaggcgttatatagaaaca
ttttccgcctatgctcggcagtttctaggtggattagaacgccccgatgttgataaaata
gaaggactttcccctgttatagctattgaacaaaaaaccactaataaaaaccctcgttct
actgtagggacggttacagaactttatgattttctcagacttctatttgctagagtttcc
accgcttattccttggaaacaggtaaaaagctacaaagctacaccgaagagcaaatttta
gaaaccatcaaagaacaatatcagaatgaaaaagtcttgcttctagcaccgctagtaaag
gctagaaaagggcattatcacgagctttttgtgcagttagcaaaaaaaggatactcccag
gcaagaatagatggcactttgcaagatatagagtacgaccttaaactagaccgatacaaa
acccacgatatagaagtagttatagaccgttggattataggcgaaaccgcatctgaagct
agaatgcaaaaatccctttctacagctttgcagatggggggcggtgtggttatggttcaa
aaatataattcggaagagtttcagtatttttctaaagatttaatggataccgccacagga
caggctttaccattaccagaaccaaatactttttcgttcaattctcctaaagggagttgt
cctcattgtaaaggtttaggaactgtaaaaaaaatcaatcctgattatctggttaccgag
cctactctacccttccagtcggcactattaccattagaaacttataaatttagtaagtgg
gctttatcccaaattaaaagcatactagagttatttgagcttagcttactaacaccattc
aacaaaattcctaaagaagccttagactacatctattacggttgtgaaaaagagtttgta
aaagatttaaaacacgcaggaatttccaaaaaaactaaaattaattttgaagggctaatt
cctcatttagaaaaagttatagaagataaagagaactacggtgctacacaagtggagcga
gagtttacagtagaagaaatctgtacagactgtaacggaacaagattaaaacccgaaagt
ttagcctttaaaatagaaggtaaaactattgctgaagttaatgcgatgagcttattagac
ttaaaagattggctttcggaaataaaaaatagcttcagcgaaaaaaacaaaattatcgcc
cacgaaattttaaaagagatagaaactcgtttgggctttttattagacgtagggctagaa
tatcttagtcttagtagaagtagtaaaaccctttctggaggcgaatcccaaaggattcgt
ttggcaacacagataggctcgcagttggtgaatgtcctttatattttagacgaaccttct
attgggcttcaccagagagataacgaaagactcatcaactctttaaaaagtttacgagat
ttaggaaactctgttcttgtggtggaacacgataaggatatgattttagaagccgatgaa
gtgctagacatcggacctaaagctggtaagtatggcggaaaagtcttgtggcaaggcagc
ccaaaagatttaataaaagctgacaccattacagcagactacctcacaggaagaagaaaa
atagaaatccctgaaaagagaagagaaggcaacggtaactcgattgtcctcaaaggagca
acgggcaataatcttaaaaatgtaaccctaaaaattcctttagggaaaatggtagtggtt
acggggatttcaggaagtggtaagtcctcactgattaacggaaccctctaccctattctc
aaccgtcatttctatcgtgctgtgcaagagcctctaccatacaaaaaaatagaaggtata
gagcatatagacaaaatagtagatgtagaccaaacgccaattggtagaacgcctcgttct
aatcctgccacttatacaggtgtgttttcggatattcgaacactatttgctaaccttcca
gaaagtaaaatcagaggttataaggcagggagattttcgtttaatgttaaaggtggacgc
tgcgaaacttgtcaaggaggtggattgaaagtgattgaaatgaatttcttgcctgatgtc
tatgtgcattgcgaaacttgtaacggcaaacgctttaatagagaaactttagaagtaaga
tataaaggtaaatctatatccgatgtcctagatatgaccatagacgaagctgtggaattt
tttcagccaatcccaaaaatctattctaaggtgaaaacgctacaagaagtaggtttaggc
tatattactttaggacaacagtctactacactttcgggcggagaggctcaaagagtaaaa
ttagccacagaactctctaaaaaacaaacaggtaaaacgctttatattttagatgaacct
accacaggactgcattttgaagatgttaagattctgatggaggttatccaaaagctagta
gatttaggaaactcttttatcattattgaacataatatggacgtgataaaacttgccgac
catattatagatgtaggtccagaaggtggtaaaaatggaggaagtatcatcgcagaaggt
actccagaagaaattataaagaataaaaaatctatcacaggtaaatttttgaaaaaagaa
atgtag
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