Rathayibacter sp. VKM Ac-2759: GSU68_01655
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Entry
GSU68_01655 CDS
T10520
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rath Rathayibacter sp. VKM Ac-2759
Pathway
rath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSU68_01655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rath03019
]
GSU68_01655
Messenger RNA biogenesis [BR:
rath03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GSU68_01655
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF7303
YicC-like_C
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QHC65412
LinkDB
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Position
359631..361337
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AA seq
568 aa
AA seq
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MRNTRTAKPARHHLELPTPKPLEKGGMRITPLGGLGEIGRNMTVFEHKGKLLIVDCGVLF
PEENQPGIDVILPDFAAIRSRLKDIEAIVLTHGHEDHIGGVPYLLKERGDIPIIASTFTL
ALISAKLQEHRITPRTRPVKEGDRVDAGVFDLEFLAVNHSIPDGLAVAIRTEAGLVLHTG
DFKMDQFPLDGRTTDLPGFARLGDEGVDLFLVDSTNADVPGFAISEGDLAPAIDQVFRTA
PRRIVVSSFASHVHRIQQVLDAAHKHGRKVAFVGRSMVRNMGIAAELGYLKIPAGLVVDM
KVLEKLPATEIVMICTGSQGEPMAALSRMANKDHIIDIGPGDTVLLASSLIPGNENAIYR
IINAFTRWGATVVHKGNAKVHVSGHASAGELAYCYNILRPTAVLPVHGEWRHLTANAAIA
TRTGIDEKNVFVIEDGVSIDLVKGRSRVSGRIPADQILVDGTTMGVATEDAMIDRRVLAE
EGAITVLAIVDLDRGTLGEPVEFFTRGFVEEPGWKDNASKAIDDAVLQAAGKPTEREAIE
ALITRTLGRWLTRRHRRNPVITTIVVEE
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacacccgcaccgccaagcccgcgcgccatcacctcgagctccccacgccgaag
cccctcgagaagggcgggatgcgcatcactccgctcggcggactcggcgagatcggtcgc
aacatgaccgtcttcgagcacaagggcaagctgctcatcgtcgactgcggcgtcctcttc
cccgaggagaaccagcccggcatcgacgtgatcctccccgacttcgccgcgatccgctcg
cgcctgaaggacatcgaggcgatcgtgctcacccacggtcacgaggaccacatcggcggc
gtcccctacctcctcaaggagcgcggcgacatcccgatcatcgcctcgaccttcacgctc
gcgctgatcagcgcgaagctgcaggagcaccgcatcaccccgcgcacccgcccggtcaag
gagggcgaccgcgtcgacgcgggcgtcttcgacctcgagttcctcgcggtgaaccactcc
atccccgacggcctcgccgtcgcgatccgcaccgaggccggcctcgtgctgcacaccggc
gacttcaagatggaccagttcccgctcgacgggcgcaccaccgacctccccggcttcgcg
cgcctcggcgacgagggagtcgacctcttcctcgtcgactcgaccaacgccgacgtgccc
ggcttcgcgatctcggagggcgacctcgcccccgcgatcgaccaggtgttccgcaccgcc
ccgcgccgcatcgtcgtctcgagcttcgcgagccacgtccaccgcatccagcaggtgctc
gacgccgcccacaagcacggccgcaaggtcgccttcgtcggccgctcgatggtgcgcaac
atgggcatcgccgccgagctcggctacctcaagatccccgcgggcctcgtggtcgacatg
aaggtgctcgagaagctcccggcgaccgagatcgtgatgatctgcaccgggtcgcagggc
gagccgatggccgcgctgtcgcgcatggccaacaaggaccacatcatcgacatcggcccg
ggcgacaccgtgctgctggccagctcgctcatccccggcaacgagaacgcgatctaccgg
atcatcaacgcgttcacccgctggggcgccaccgtcgtgcacaagggcaacgccaaggtg
cacgtctcgggtcacgccagcgcgggcgagctcgcctactgctacaacatcctccgcccg
accgccgtgctccccgtgcacggcgagtggcgccacctcaccgccaacgcggcgatcgcg
acccgcaccgggatcgacgagaagaacgtcttcgtcatcgaggacggcgtctcgatcgac
ctcgtcaagggccgctcgcgcgtcagcggacgcatcccggccgaccagatcctggtcgac
ggcaccacgatgggcgtcgccaccgaggacgcgatgatcgaccgccgcgtgctcgcggag
gagggcgccatcacggtgctcgccatcgtcgacctcgaccgcggcacgctcggcgagccg
gtcgagttcttcacccgcggcttcgtcgaggagccgggctggaaggacaacgccagcaag
gcgatcgacgacgcggtgctgcaggccgccggcaagccgaccgagcgcgaggcgatcgag
gccctgatcacccgcaccctcggtcgctggctgacccgccgccaccgccgcaacccggtg
atcaccaccatcgtcgtcgaggagtag
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