Rathayibacter sp. VKM Ac-2759: GSU68_05590
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Entry
GSU68_05590 CDS
T10520
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rath Rathayibacter sp. VKM Ac-2759
Pathway
rath03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rath00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GSU68_05590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rath03400
]
GSU68_05590 (mfd)
Enzymes [BR:
rath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GSU68_05590 (mfd)
DNA repair and recombination proteins [BR:
rath03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GSU68_05590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QHC66107
UniProt:
A0A6P1F7D4
LinkDB
All DBs
Position
1235971..1239588
Genome browser
AA seq
1205 aa
AA seq
DB search
MPLNEIISALARASTFDDALAYSVRDADFSVADGLRVPLLAGLLERRAEAGRPQAALVVT
ATGRDSENIRASLGCVLPEAEVVEFPAWETLPHERLSPSAEIVGRRLDALRRMKQWTGER
PLVVVASVRAALQPVADNLADIEPIRLVKGTRGYDLGRIAAELVDLAYARVDMVTRRGEF
AVRGGILDVFPAVAEHPSRVDFFGDEVDSIRGFSVADQRSLPGESDSVVLPPSRELLLVP
AVRQRAREMLHEFPSLSGLLAKIAEGIPVEGMESLAPALLERLVPISHYLPEGAAVAVLA
PERVATRAISLAETNREFLQAAWSAATAGAEAPIDLASGEFISLGALRDAVKFSAPGAAA
PDHPWWTMSTFRQGPAAGEAEVLPEDLGIDEILAVRVEGEPVPGFGGNVEGALAHVRARL
ADGWTVVLTAPGPGTVERTDQVLAEHEVAARIVADLPGTLDSGLAYVLQASVDHGFEVAE
AKLALLTDTEFYGRTVGYDSRAVKKLASRRKNVVDPLQLTPGDHVVHATHGIGRFVELSQ
REVSSGGRNAVKTRREYLVLEYAPSKRGFPGDKLLVPTDQLDLLSRYVGGEAPALSKMGG
SDWAQAKSKARRAVRDIAVELVKLYSARMASRGHAFPPDTPWQRELEEAFPFAETPDQLT
VIDEVKADMERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVRQHLE
TFQERFAGFPVHLRALSRFQSAKESKETIDGLADGTVDMVIATHRLLSDSIVFKDLGLLV
IDEEQRFGVEHKEKLKALKKDVDILSMSATPIPRTLEMAVTGIREMSTLATPPEERHPIL
TFVGPYSEKQISAAIRRELLREGQVFFVHNRVSTINRVASQLAELVPEARIAVAHGKLSE
AQLERIIVDFWERKFDVLVSTTIVETGLDIPNANTLIVDRADKYGLSQLHQLRGRVGRGR
ERAYAYLLYDEMKPLSETAHDRLQTLAANSDLGGGMQIALKDLEIRGAGNLLGGEQSGHI
QGVGFDLYLRMIGEAVDTFRGDVAEGQTELRLELPVDARIPEEYVDSERLRLEAYQKLSA
ATSPNAKEGSVDLVVEELTDRYGELPEAVENLILVSRLRMRAQAAGLSDVVAMGSNVRVA
PAHLADSIQVRLRRMYPSAKYLQQANAVVVPMPVIDGAPLGDRALIEWVRTLLDALFPEP
ATVAS
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
gtgcccctcaacgagatcatctcggcgcttgcgcgcgcctccacgttcgacgacgctctc
gcgtactcggtgcgcgatgccgatttctccgtggccgacgggctccgcgtgccgctgctc
gcaggcctcctcgagcggcgggccgaggccgggcgcccacaggccgccctggtcgtgacc
gcgacgggccgcgactccgagaacatccgcgcctccctcggctgcgtgctgcccgaggcc
gaggtggtcgagttccccgcgtgggagacgctgccgcacgagcggctcagcccgagcgcc
gagatcgtggggcgccggctcgacgccctgcgccggatgaagcagtggacgggggagcgc
ccgctggtggtcgtcgcctccgtgcgcgccgccctgcagccggtcgccgacaatctcgcc
gacatcgagccgatccgcctggtcaagggcacccgcggctacgatctcggccggatcgcc
gccgagctggtcgatctcgcgtacgcgcgcgtcgacatggtgacccggcggggcgagttc
gccgtccgcggcggcatcctcgacgtgttcccggcggtcgccgagcacccgagccgcgtc
gacttcttcggtgacgaggtcgactcgatccggggcttctcggtcgccgaccagcgctcg
ctgccgggggagtccgactccgtcgtcctgccgccgagccgcgagctgctgctcgtgccc
gccgtccgccagcgcgctcgcgagatgctgcacgagttcccgagcctctcgggcctgctc
gcgaagatcgccgagggcatcccggtcgagggcatggagtcgctcgcgcccgcgctcctc
gagcgcctcgtcccgatctcgcactacctccccgagggggcggcggtcgccgtcctcgcc
cccgagcgcgtcgcgacccgcgccatcagcctcgccgagacgaaccgggagttcctgcag
gccgcgtggagcgccgcgaccgccggcgccgaggctccgatcgacctcgcctcgggcgag
ttcatctcactcggcgccctgcgcgacgccgtgaagttcagcgcccccggcgccgcggcc
cccgaccacccgtggtggaccatgagcacgttccgccaggggccggccgcgggcgaggcc
gaggtgctcccggaggatctggggatcgacgagatcctcgccgtccgcgtcgagggcgag
cccgtgcccggcttcggcggcaacgtcgagggcgcgctcgcgcacgtccgcgcccgcctc
gccgacggctggaccgtcgtcctcaccgcgccgggacccggcaccgtcgagcgcaccgat
caggtgctcgccgagcacgaggtcgccgcccgcatcgtcgccgacctgcccggcacgctc
gactccggtctcgcctacgtgctgcaggcgtcggtcgatcacggcttcgaggtcgcggag
gcgaagctcgccctgctcacggacaccgagttctacggccgcacggtcggctacgactcg
cgcgccgtcaagaagctcgcgtcgcggcgcaagaacgtcgtcgatccgctgcagctcacg
cccggcgaccacgtcgtgcacgccacgcacggcatcggcaggttcgtcgagctctcgcag
cgcgaggtgtccagcggcgggcgcaacgccgtcaagacgcgccgcgagtacctcgtgctc
gagtacgcgcccagcaagcgcggcttcccgggcgacaagctcctcgtccccaccgaccag
ctcgacctcctctcccgctacgtcggaggcgaggcgccggccctcagcaagatgggcggc
agcgactgggcgcaggccaagagcaaggcgcgccgcgcggtccgcgacatcgccgtcgag
ctcgtgaagctctactccgctcggatggcgtcgcgcgggcacgcgttcccgccggacacc
ccgtggcagcgcgagctcgaagaggcgttcccgttcgccgagacccccgaccagctcacg
gtgatcgacgaggtgaaggccgacatggagcggccgatcccgatggaccgcctcctctcg
ggcgacgtcggcttcggcaagaccgaggtcgccgtccgcgccgccttcaaggcgatccag
gacggcaagcaggtcgcgatgctcgtgcccacgaccctgctcgtgcgtcagcacctcgag
acgttccaggagcgcttcgccgggttcccggtgcatctgcgcgcgctgagccgcttccag
agcgcgaaggagtcgaaggagacgatcgacggcctcgccgacggcacggtcgacatggtc
atcgcgacgcaccgcctcctctcggacagcatcgtcttcaaggacctcggcctgctcgtg
atcgacgaggagcagcgcttcggcgtcgagcacaaggagaagctgaaggcgctgaagaag
gacgtcgacatcctctcgatgagcgcgacgccgatcccgcgcacgctcgagatggcggtc
acgggcatccgcgagatgtcgacgctggccacgccgcccgaggagcgccacccgatcctc
accttcgtcggcccgtactccgagaagcagatctcggccgcgatccgccgcgagctgctg
cgcgagggccaggtgttcttcgtgcacaaccgcgtctcgacgatcaaccgggtcgcctcg
cagctggccgagctggttccggaggcgcgcatcgcggtcgcgcacggcaagctcagcgag
gcgcagctcgagcgcatcatcgtcgacttctgggagcgcaagttcgacgtgctcgtctcg
acgacgatcgtcgagaccggactcgacatccccaacgcgaacaccctgatcgtcgaccgc
gccgacaagtacggcctctcgcagctgcaccagcttcgcggccgggtcggtcgcgggcgc
gagcgcgcctacgcctacctgctctacgacgagatgaagccgctcagcgagacggcgcac
gaccgcctgcagacgctcgccgccaactccgatctcggcggcggcatgcagatcgcgctg
aaggacctcgagatccgcggagccggcaacctgctcggcggcgagcagtcgggtcacatc
cagggcgtcggcttcgacctctacctgcggatgatcggcgaggccgtcgacacgttccgc
ggcgatgtggcggaggggcagacggagctccggctcgagctgccggtcgacgcgcggatc
ccggaggagtacgtcgacagcgagcggctgcgcctcgaggcgtaccagaagctgtcggcc
gcgacctcgccgaacgcgaaggagggcagcgtcgacctcgtggtcgaggagctcaccgac
cgctacggcgagctcccggaggcggtggagaacctgatcctggtgtcgcgcctccgcatg
cgcgcgcaggccgccgggctcagcgacgtcgtcgcgatgggctccaacgtgcgggtcgcc
ccggcgcacctcgccgactcgatccaggtgcgcctgcgccggatgtacccgagcgcgaag
tacctccagcaggccaacgcggtcgtcgtgccgatgcccgtgatcgacggcgcgccgctg
ggcgatcgcgcgctgatcgagtgggtgcgcacgctcctcgacgcgctgttcccggagccg
gccacggtcgcgagctga
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