Rathayibacter sp. VKM Ac-2759: GSU68_16575
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Entry
GSU68_16575 CDS
T10520
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rath Rathayibacter sp. VKM Ac-2759
Pathway
rath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSU68_16575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rath03019
]
GSU68_16575
03009 Ribosome biogenesis [BR:
rath03009
]
GSU68_16575
Enzymes [BR:
rath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSU68_16575
Messenger RNA biogenesis [BR:
rath03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GSU68_16575
Ribosome biogenesis [BR:
rath03009
]
Prokaryotic type
rRNA helicases
GSU68_16575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
UvrA_inter
HEM4
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QHC68022
UniProt:
A0A6P1FIV3
LinkDB
All DBs
Position
complement(3541402..3543228)
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AA seq
608 aa
AA seq
DB search
MATTDTPSSAPESDTAPEAATTPEADSAPSLTFTDLGLSDPVLKALKEVGYETPSAIQAA
TIPSLLSGRDVLGVAQTGTGKTAAFALPILSRLDLSQKTPQALVLAPTRELALQVCEAFE
RYASGLRGVHVLPVYGGQGYGTQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSQLKFLVL
DEADEMLKMGFAEDVETILADTPIEKQIALFSATMPAQIRRISGKYLKEPEEITVKNKTT
TSVNTTQRYLMVSYPQKVDALTRILEVENFEGMIVFVRTKSETESLAEKLRARGYTAAAI
SGDVQQAQRERTVEQLKSGKLDILVATDVAARGLDVERISHVVNYDIPIDTESYVHRIGR
TGRAGRSGAAISFVTPRERRLLVAIEKATRQPLTEMRMPSVEDVNVTRLSRFDDAITEAL
ADRERLDRFRDIIGHYVEHHDVVESDVAAALAIVAQGEEPLLLSPDDPRFARRERDGRSD
SRSDRGDDRGERPERRQRSSNSNLASYRIEVGRRQRVEPRQIVGALANEGGLNRGDFGHI
DIRPDFSIVELPADLSQDVLDRLAGTRISGQLIELKPDRRPSRAGGDRGGRPSGPSRSSD
RPERKPRY
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaccgatacaccttcttccgcccccgagagcgacaccgctccggaggcagcg
accactcccgaggccgattccgccccctcgctgaccttcaccgacctcggcctgagcgac
cccgtgctcaaggcgctcaaggaggtcggctacgagaccccctcggcgatccaggccgcg
acgatcccctccctcctctccggccgcgacgtcctcggcgtcgcgcagaccggcaccggc
aagaccgccgcgttcgcgctgccgatcctgtcgcggctcgacctctcgcagaagaccccg
caggccctcgtcctcgcgcccacgcgtgagctcgcactgcaggtctgcgaggcgttcgag
cgctacgcgtccggcctccgcggcgtccacgtgctccccgtctacggcggtcagggctac
ggcacgcagctctccgcgctccgccgcggcgtccacgtcgtcgtcggcacgcccggccgc
atcatggaccacctcgagaagggcacgctcgacctctcgcagctcaagttcctggtgctc
gacgaggccgacgagatgctcaagatgggcttcgcggaggacgtcgagacgatcctcgcc
gacaccccgatcgagaagcagatcgcgctgttctcggcgacgatgcccgctcagatccgc
cgcatctcgggcaagtacctcaaggagcccgaggagatcacggtcaagaacaagaccacg
acctccgtcaacaccacccagcgctacctgatggtgtcgtacccgcagaaggtcgacgcc
ctcacccgcatcctcgaggtcgagaacttcgagggcatgatcgtgttcgtccgcaccaag
agcgagacggagtcgctggccgagaagctgcgcgcccgcgggtacaccgccgccgcgatc
agcggagacgtgcagcaggcccagcgcgagcgcacggtcgagcagctgaagtcgggcaag
ctcgacatcctggtcgcgacggatgtcgccgcccgcggtctcgacgtcgagcggatcagc
cacgtcgtcaactacgacatcccgatcgacaccgagtcgtacgtgcaccgcatcggccgc
accggtcgtgccggccgcagcggagccgcgatcagcttcgtcacgccgcgcgagcgccgc
ctcctcgtcgcgatcgagaaggcgacccgccagcccctcaccgagatgcggatgccgagc
gtcgaggacgtcaacgtcacccgcctctcgcgcttcgacgacgcgatcacggaggcgctc
gccgatcgcgagcggctcgaccggttccgcgacatcatcggccactacgtcgagcaccac
gacgtggtcgagtcggacgtcgccgccgcgctggcgatcgtcgcgcagggcgaggagccg
ctgctgctctcgcccgacgacccgcgcttcgcccgtcgcgagcgcgacggccgcagcgac
agccgctcggaccgcggcgacgaccggggcgagcgccccgagcgccgtcagcgctcgtcg
aacagcaacctggcgtcgtaccgcatcgaggtcggccgccgtcagcgcgtcgagccccgc
cagatcgtgggcgcgctcgcgaacgagggcgggctcaaccgcggcgacttcgggcacatc
gacatccgtccggacttctcgatcgtcgagctgccggccgacctgtcgcaggacgtgctc
gaccgtctcgccggcacccgcatcagcggtcagctgatcgagctgaagcccgaccgtcgt
ccgagccgcgccggcggcgaccgcggcggccgcccctcgggcccgtcgcgctcgtcggac
cgtccggagcgcaagccccgctactga
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