Rhodococcus aetherivorans: AAT18_07965
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Entry
AAT18_07965 CDS
T03876
Name
(GenBank) recombinase RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rav
Rhodococcus aetherivorans
Pathway
rav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AAT18_07965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rav03400
]
AAT18_07965
Enzymes [BR:
rav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AAT18_07965
DNA repair and recombination proteins [BR:
rav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AAT18_07965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
Helicase_RecD
UvrD-helicase
AAA_22
SH3_13
TraI_hel_assoc_N
AAA_24
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
AKE89181
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Position
1707196..1709079
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AA seq
627 aa
AA seq
DB search
MTNAQVAQRGKGALRVFNEAGVLAAADVHVALRLAQLSGETAEDVHLATALAVRAVRAGS
VCLDLTRLREVTVDEAAEVDLAALPWPDDDAVVAGLRRSPLVVGGDRGPLRPLRLVDTAD
GPLLYLERYFRQEETVRQILDARGLDHPVVDEQTLERGLRELFRDQHDPGRPAAAPDRQR
IAAALAATGWTTVIAGGPGTGKTHTVARILALLTTLHGPALRIGLAAPTGKAAARLQESV
REQAEPLGLRADLSAMTLHRMLGWQRGRTRYRYHAGNHLPYDVVVVDETSMVSLTMMCRL
LEAVRPGTRLILVGDPDQLTSVDAGAVLADLVARPVTAAGNPVLGRVVGPDLDAGDDPAE
AALSPGERNRLRGGVIRLSRGRRFGGDIAHLAVAVREGDADAVMRILGGGGTEVSFHAPN
DLEALRHDVVTTAATVTAAAVAGDAGTALEQFETHRLLCAHREGPYGVQWWARRAMEWIA
TDTGRRLDAERWYPGQPLLVTANDHETRIYNGDTGVVVVDAAGEPVAAFARGREPFRLHP
SQLSAVQTVYAMTIHRSQGSQYGTVSVILPPPESSLLTRELLYTAITRARGHVRLIGTEE
AVRAGVERRVLRASGLRRQLPGPRAVR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaacgcccaggtggcccagcgtggcaagggggccctgcgggtcttcaacgaggcc
ggggtgctcgcggccgccgacgtgcacgtcgcgctgcggctggcccagctgtccggggag
accgccgaggacgtgcacctcgcgaccgcgttggccgtgcgcgccgtgcgtgccggttcg
gtgtgcctggacctgacccggttgcgggaagtcaccgtcgacgaggccgcagaggtggat
ctcgcggcgctgccgtggccggacgacgacgccgtcgtcgccgggttgcgccgcagtccg
ctcgtcgtcggcggggaccgcggcccgctgcgcccgctgcgcctggtggacaccgccgac
ggcccgctgctgtatctcgagcgctacttccgtcaggaggagacggtccggcagatcctc
gacgcccgcgggctcgatcatcccgtcgtcgacgagcagacgctcgagcgggggctgcgg
gagctgttccgggaccagcacgaccccggccgcccggccgccgcaccggatcggcagcgc
atcgccgcggcgctggccgccaccgggtggaccacggtcatcgccggcgggccgggcacc
ggcaagacccacaccgtcgcccggatcctggcgctcctgaccacgctgcacggccccgcc
ctgcgcataggattggccgcgcccaccggcaaggccgcggcccggctgcaggaatccgtc
cgcgagcaggccgagccgctgggcctgcgcgccgacctgtccgcgatgaccctgcaccgc
atgctcggctggcagcgcggccgcacccggtatcgctaccacgccggcaaccatctgccc
tacgacgtcgtggtcgtcgacgagacgtcgatggtgtcgctgaccatgatgtgccggctg
ctcgaggccgtccgccccggcacccgcctgatcctggtgggcgaccccgaccagctgacc
tccgtcgacgccggcgccgtcctggccgacctcgtcgcccgtcccgtcaccgccgcggga
aaccccgttctcggccgcgtcgtgggacccgacctcgacgccggcgacgaccccgccgag
gcggcgctctcgccgggggaacggaaccggctgcgcggcggcgtgatccggctcagccgc
ggccggcggttcggtggagacatcgcacacctggccgtcgccgtgcgggagggcgacgcc
gacgcggtgatgcggattctcgggggcggtggcaccgaggtgtccttccacgccccgaac
gacctggaggccctgcggcacgacgtcgtcaccaccgccgcgaccgtcaccgccgccgcc
gtcgcgggcgacgccgggactgcgctcgagcagttcgagacgcaccgcctgctgtgcgcg
caccgcgagggaccgtacggggtgcagtggtgggcgcggcgggcgatggagtggatcgcc
accgacaccggccggcggctcgacgccgagcgctggtacccgggtcagccgctgctcgtc
accgccaacgaccacgagacccgcatctacaacggcgacaccggcgtcgtggtcgtcgac
gccgccggcgaacccgtcgcggcattcgcgcgcggcagggagccgttccggctccacccg
agccagctgtcggccgtgcagaccgtgtacgcgatgacgatccaccgcagccagggcagc
cagtacggcacggtctcggtgatcctgcccccgcccgaatcctcgctgctgacacgcgaa
ttgctgtacaccgcgatcacccgggcgcgcggtcacgtgcgcctgatcggcaccgaggaa
gccgtccgcgccggggtcgagcggcgggtgctgcgagccagcggcctgcgccggcagctg
ccgggccctcgggccgtccggtga
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