Rhodococcus aetherivorans: AAT18_11130
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Entry
AAT18_11130 CDS
T03876
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rav
Rhodococcus aetherivorans
Pathway
rav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAT18_11130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rav03019
]
AAT18_11130
03009 Ribosome biogenesis [BR:
rav03009
]
AAT18_11130
Enzymes [BR:
rav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AAT18_11130
Messenger RNA biogenesis [BR:
rav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AAT18_11130
Ribosome biogenesis [BR:
rav03009
]
Prokaryotic type
rRNA processing factors
AAT18_11130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AKE89688
LinkDB
All DBs
Position
2410167..2413289
Genome browser
AA seq
1040 aa
AA seq
DB search
MAEQAPPNDNSNEEGTVVLPPKMRVHALAKLLGLTSKQVMAKAADLGTELRSAHSSLQRD
LAEQIRAALGAPAEAEPVPTAEAAPEPVGEAPEVPAGEAAVAVPAEVPVEEPAAAVQDTT
AQEPAAESVEAPAAPALFTGVEQETPVFAAPEPSTAEPVVSAPLFLQPEVTTPVEAPPRR
RRSRRAAEAPEPAVAEEVTEETAAVEEPAEETAEEEEPRRRRRGRRGRGRGRGEQPETQD
ETTAEEGTAAAEAEEAEAEEPTEAEEPTTEEAATAGPEAGEAEGGEAEQAEAEQAEAEEE
SAEGPSRRRRRRRRRKGSADGAETVAEDDSVPTVVHEREPRPKARAAKDEVQGITGSTRL
EAKRQRRRDGRDAGRRRPPILTESEFLARRESVDRVMVVREKTGDGAHPGNITQVAVLED
GVLVEHFVTSAGSGSMVGNIFLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLG
GNSRKIEQALKPGDRVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGSSTGISRKLPD
TERKRLKEILREIVPAEAGVIIRTAAEGVSEDELARDVQRLQTQWASIEEQAAKLESDGS
GQPKTLYEEPDLLVKVIRDLFNEDFSKLVIEGENAWTTVESYIRTVAPDMVPRVERHDPD
SGGRDVFAAHRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEET
VTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSE
VTSLGLVQMTRKRLGTGLVEAFSTTCEHCHGRGIVVHSEPVEAGAAEDGGRPARAESGSR
RRRGRDRGTQPEAATTETAAPAPVPEVATVDATVKRAHPVALAMAAHHGNHDENPAESGA
EQAQAAPAQPAETREAEPAETREAGPVETREAGPAESRKAGPADTREARPAEAPEAEKQA
AEPAARRRRRVSRAAAAPTGDGTGAGTVFVVPTPAPAPEPAAVAAAPVPDGENAEPVVVR
RPRRRRAAGRPAGPPVEAQA
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaacaagcgccgccgaacgacaattccaacgaagagggcaccgtggtgctgccg
ccgaagatgcgcgtgcacgcccttgccaaactgctcggcctgaccagcaaacaggtcatg
gccaaggccgccgacctcggcaccgagctgcgcagtgcccactcgagcctgcagcgcgac
ctcgccgaacagatccgcgccgcgctcggcgcaccggccgaggccgaaccggtgcccacc
gcggaagccgcaccggaaccggtgggtgaggcgcccgaggtgcccgccggagaggccgcc
gtcgcggtgcccgccgaggtccccgtggaggagccggcggccgcggtccaggacactacc
gctcaggaacccgccgcggagtccgtcgaggcacccgcggccccggccctgttcaccggc
gtggagcaggagaccccggtgttcgccgcgccggaaccgagcaccgccgagcccgtcgtc
agcgcaccgctgttcctgcagccggaggtcaccactcccgtggaggccccgccccgtcga
cgccgttcccggcgagcggccgaggcacccgagcccgccgtcgccgaggaggtcaccgag
gagaccgccgcggtggaggaaccggccgaggagaccgccgaggaggaggagccgcgtcgg
cgccgtcgtggccgccgtggccgtggccgtggccgcggcgaacagcccgagacgcaggac
gagaccaccgccgaggaggggacagctgcggcggaggccgaggaagcggaggccgaggag
ccgacggaggccgaggagccgacgacggaggaagccgcgaccgccgggccggaggccggg
gaggccgaaggcggggaggccgagcaggccgaggccgagcaggccgaggccgaggaggag
tccgcggaaggtccctcgcgccgtcgtcgccgtcgtcgtcgccgcaagggcagcgcggac
ggcgccgagaccgtcgccgaggacgactcggtccccaccgtcgtccacgagcgcgagccg
cggcccaaggcccgcgccgccaaggacgaggtgcagggcatcaccggttccacccggctc
gaggccaagcgccagcgccgccgcgacggccgggacgcgggccgccgtcggcccccgatc
ctcaccgagtcggagttcctcgcccgtcgcgagtccgtcgaccgcgtcatggtggtgcgg
gagaagaccggtgacggtgcgcaccccgggaacatcacgcaggtcgcggtcctcgaggac
ggcgtcctggtcgagcacttcgtgaccagcgccggatccggttcgatggtcggcaacatc
ttcctcggccgtgtccagaacgtgcttccctcgatggaggcggcgttcatcgacatcggc
aggggccgcaacggcgtcctctacgccggcgaggtcaactgggaggccgccgggctcggc
ggcaactcccgcaagatcgagcaggccctcaagccgggtgaccgggtgctcgtgcaggtc
agcaaggacccggtcgggcacaagggcgcccgcctgaccacgcagatcagcctcgccggc
cggttcctggtgtacgtgccgggcggctcgtccaccggcatcagccgcaagctgcccgac
accgagcgcaagcggctcaaggagatcctgcgcgagatcgtcccggccgaggccggcgtg
atcatccgcaccgcggcggagggcgtgagcgaagacgagctcgcccgcgacgtgcagcgc
ctgcagacgcagtgggcttccatcgaggagcaggccgccaagctcgagtccgacggctcg
gggcagccgaagaccctctacgaagagcccgacctgctggtcaaggtgattcgcgacctg
ttcaacgaggacttctccaaactcgtcatcgagggcgagaacgcctggaccaccgtcgag
agctacatccgcaccgtcgcaccggacatggtgccccgcgtggagcggcacgatcccgac
tcgggtggacgcgacgtgttcgccgcccaccgcatcgacgagcagctcgccaaggcgctc
gaccgcaaggtgtggctgccgtccggtggcacgctcgtcatcgatcgcaccgaggcgatg
accgtcgtcgacgtcaacaccggcaagttcaccggggccggcggcaatctcgaagagacc
gtcacccgcaacaacctcgaggcggccgaggagatcgtgcggcagatgcggctgcgcgac
atcggcggcatgatcgtcgtcgacttcatcgacatggtgctcgagtcgaaccgcgacctg
gtgctgcgacgcctcaccgaggcgctcggccgggaccgcacccgccaccaggtctccgag
gtgacctcgctggggctcgtgcagatgacgcgcaagcggctcggcacgggtctggtggag
gcgttctccaccacgtgcgagcactgccacggccgcggcatcgtcgtgcacagcgaaccc
gtcgaggccggcgcggccgaggacggtgggcggcccgcccgtgccgagagcggctcccgg
cgccgccggggccgtgaccgcggcacccagccggaggcggcgacgaccgagacggccgcg
cccgcgccggtacccgaggtggcgacagtggacgcgaccgtcaagcgtgcccacccggtg
gccctggcgatggctgcgcaccacgggaaccacgacgagaacccggcggaatccggcgcc
gagcaggcgcaggcagcgccggcccagccggccgaaacacgcgaggctgagccggccgaa
acacgcgaggctgggccggtcgaaacacgcgaggctgggccggccgaatcacgcaaggct
gggcccgccgacacgcgcgaggcgcggccggccgaagcaccggaggccgaaaagcaggca
gcggagccggcggcccgtcgccgtcgccgggtctcacgggccgccgcggccccgacgggc
gacggcaccggcgccggcaccgtcttcgtggtgcccacaccggcccccgcaccggagcct
gcggcggtggccgccgcgccggtcccggacggggagaacgccgagccggtggtcgttcga
cggccgcgtcgtcgccgggccgcgggccggcccgccggcccgccggtcgaagcacaggca
tga
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