Rhodococcus aetherivorans: AAT18_11260
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Entry
AAT18_11260 CDS
T03876
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rav
Rhodococcus aetherivorans
Pathway
rav03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AAT18_11260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rav03400
]
AAT18_11260
Enzymes [BR:
rav01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AAT18_11260
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AAT18_11260
DNA repair and recombination proteins [BR:
rav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AAT18_11260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TackOD1
Auto_anti-p27
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AKE89711
LinkDB
All DBs
Position
2440919..2441788
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AA seq
289 aa
AA seq
DB search
MPELPEVEVVRRGLDAHVRGATIESVQVLHPRAVRRHEPGPRDLALRLTGQTVAAVQRRG
KYLWLVLGPADVALVVHLGMSGQMLVQPPAVPDEKHLRIRAVLDNGADLRFVDQRTFGGW
ALAPLVEVDGAVLPEPVAHIARDPLDPAFDAAAVVKVLRGKHTEIKRVLLDQTVVSGIGN
IYADESLWRAGVHGNRAADRLGGPTLRRLLDAARDVMGEALAQGGTSFDALYVNVNGESG
YFDRSLNVYGQENLPCPRCGTPVRREKFMNRSSFSCPRCQPPPRGARRA
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaactgcccgaggtcgaggtcgtccgccgcggcctcgacgcgcacgtccgcggc
gccaccatcgagtccgtccaggtgctgcacccgcgtgcggtacgccgtcacgaacccggc
ccgcgggatctcgcgctgcggctgaccgggcagaccgtggctgccgtccagcgtcgcggc
aaatacctgtggctcgtcttgggacccgccgacgtcgcactggtcgtccatctcgggatg
agcgggcagatgctggtccagccgccggcggtgccggacgagaaacacctgcgcatccgc
gccgttctcgacaacggcgccgacctgcggttcgtggaccagcgcaccttcggaggctgg
gccctcgccccgctcgtcgaggtcgacggtgccgtcctgccggagcccgtcgcgcacatc
gcccgcgaccccctggatccggcgttcgacgcggccgccgtggtgaaggtgctgcgcggc
aagcacaccgagatcaagcgcgtcctcctcgaccagaccgtcgtgtccggcatcggcaac
atctacgccgacgaatcgctgtggcgggccggcgtgcacggcaaccgcgcggccgaccgg
ctcggggggccgaccctgcggcggctgctcgacgcggcccgcgacgtgatgggcgaggcg
ctcgcccagggcggtacctcgttcgatgccctctatgtcaacgtcaacggcgagtccgga
tacttcgaccggtcgctgaacgtctacggccaggagaacctgccgtgcccacggtgcggg
acgccggtgcggcgggagaaattcatgaaccgctcgtcgttcagctgcccccggtgccag
ccgccgccacggggcgcacggcgagcctga
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