Rhodococcus aetherivorans: AAT18_11800
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Entry
AAT18_11800 CDS
T03876
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rav
Rhodococcus aetherivorans
Pathway
rav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAT18_11800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rav03019
]
AAT18_11800
Messenger RNA biogenesis [BR:
rav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AAT18_11800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
TPR_DNAAF5
Peptidase_M16_C
Motif
Other DBs
NCBI-ProteinID:
AKE89805
UniProt:
A0ABQ0YL82
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Position
2557409..2559226
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AA seq
605 aa
AA seq
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MSRPSRGRGRATRNAGPPSGRPARRTVQTSANTQRPDPRKVADMSGRLGTPPKAPPKGLR
VVALGGIGEIGRNMTVFEHQGRLLVIDCGVLFPEDQQPGVDLILPDFRHIEDRMDDVEAV
VLTHGHEDHIGAVPFLLRLRPDIPVVGSKFTLALVAAKCREHRLRPNLVEVVEGDKTTHG
PFECEYFAVNHSIPDALAVAVRTEAGLVLHTGDIKLDQLPLDGRLTDLAGFSRLGDEGVD
LFLVDSTNAEVPGFVMPEREIGGVLDNVIGKATQRVIVASFASHVHRIQQVVDVAGRYNR
RIAFVGRSMVRNMQIAQDLGYLRVPDGLVVDLDTAATLPDNRLVLISTGSQGEPLSALSR
MARGEHRQINIKADDLVILASSLIPGNENSVFAVVNGLAKRGATVVTQQNAKVHVSGHAS
AGELLYLYNAVRPTNAMPVHGEWRHLRANAALAEATGVPRDRIVLAEDGVVVDLVDGLAE
IVGQVPVGHVYVDGLSVGDVGESTLSDRLILGEGGFISISVAVDENGRAVSTPGVSGRGF
SDDPGALSEAAQLVDKVLNELAAEGIDDAHRIAQAIRRVVGRWVSDTYRRRPMIVPTVIT
VPGPA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
gtgagccgcccgtcgcgcggccggggccgcgccacccgcaacgccggaccgcccagcggc
cggcccgcgcgccggaccgtgcagacctcggccaacacccagcggcccgatccgcgcaag
gtggcggacatgtcggggcgcctcggcaccccgccgaaggcgccgccgaagggcctgcgc
gtcgtcgcgctcggcggcatcggcgagatcggtcgcaacatgacggtcttcgagcatcag
ggccggctcctcgtcatcgactgcggcgtgctcttccccgaggaccagcagcccggcgtc
gacctgatcctgccggacttccggcacatcgaggaccgcatggacgacgtcgaagccgtc
gtcctcacccacggccacgaggatcacatcggggcggtgccgttcctgctgcgcctgcgt
cccgacatcccggtcgtgggctcgaagttcaccctcgcgctcgtcgccgcgaaatgccgc
gagcaccggctgcggcccaacctcgtcgaagtcgtcgagggggacaagaccacgcacggc
ccgttcgagtgcgagtacttcgccgtcaaccactcgatcccggacgcgctcgccgtcgcc
gtccgcaccgaggccgggctcgtgctgcacaccggcgacatcaagctcgaccagttgccg
ctcgacggccgcctcaccgacctcgccggattctcccggctcggcgacgagggcgtcgac
ctgttcctcgtcgactccaccaacgccgaggtgccgggcttcgtgatgcccgaacgcgag
atcggcggcgtcctggacaacgtcatcggcaaggccacccagcgcgtgatcgtcgcgtcc
ttcgccagccacgtgcaccgcatccagcaggtcgtcgacgtcgccgggcggtacaaccgc
cgcatcgccttcgtcggacggtcgatggtgcgcaacatgcagatcgcgcaggacctcggc
tacctgcgggtgccggacgggctcgtcgtcgatctcgacaccgccgcgacattgcccgac
aaccggctcgtgctgatctccaccggctcgcagggtgaaccgctgtccgcgctgtcgcgc
atggcgcgcggcgagcaccgccagatcaacatcaaggccgacgatctcgtcatcctggct
tcctccctgatcccgggcaacgagaattcggtgttcgcggtcgtcaacggcctcgccaag
cgaggcgccaccgtcgtcacccagcagaacgcgaaggtgcacgtctccggccacgcctcc
gcgggcgagctgctgtacctgtacaacgcggtgcgcccgacgaatgcgatgccggtgcac
ggcgaatggcggcacctgcgggccaacgcggcgctggccgaggcgaccggggtgccgcgg
gaccggatcgtgctcgccgaggacggcgtggtcgtcgacctcgtcgacgggctcgcggag
atcgtcggacaggtacccgtcggccacgtctacgtcgacggcctgtccgtcggtgacgtc
ggcgaatcgaccctgtcggaccggttgatcctcggcgagggcggcttcatctccatctcc
gtcgccgtggacgagaacggtcgcgccgtgagcaccccgggggtgtccggccgcggcttc
tccgacgacccgggagcgctctccgaggccgcgcaactcgtggacaaggtcctcaacgag
ctcgccgccgagggtatcgacgacgcccaccgcatcgcccaggcgatccgccgtgtcgtc
gggcgctgggtgtccgacacctaccgtcgccggccgatgatcgtgccgacggtgatcacc
gtcccgggcccggcgtag
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