Rhodococcus aetherivorans: AAT18_23235
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Entry
AAT18_23235 CDS
T03876
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rav
Rhodococcus aetherivorans
Brite
KEGG Orthology (KO) [BR:
rav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rav03016
]
AAT18_23235
Enzymes [BR:
rav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AAT18_23235
Transfer RNA biogenesis [BR:
rav03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AAT18_23235
Prokaryotic type
tRNA splicing ligases
AAT18_23235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKE92778
LinkDB
All DBs
Position
complement(5183490..5184911)
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AA seq
473 aa
AA seq
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MRIVEETPYRFRIDRAGAMRVPGIVFAARSLLPVAEGDEALTQVANVATLPGIVTASFAM
PDVHWGYGFPIGGVAATDIDDGGVVSPGGVGFDISCGVRLLIARDADRSALASRLGVLMD
RLGRVVPRGMETRGVWELPDRTVLRQVLAGGARFAVEQGHGVARDLERCEDRGVLDGADP
DAVSDRAVERGLGQLGSLGSGNHFLEVQAVERVFDPDTARLMGLDVGTVCVMIHCGSRGL
GHQICTDHVREMGKAMGRYGIHVPDRQLACVPVRSPEGEAYLGAMVAAANYGRANRQLLT
EAARRVFEETAGTTLDLLYDISHNLAKIERHEVGGRVRALCVHRKGATRSLPPDHPDVPA
DLTDAGQPVLIPGTMGTASYVLAGVAGNPAFYSTAHGAGRVQSRHRAARHTDGRAVRDAL
ETHGVLVRGSSWRGLAEEKPEAYKDIDAVAEVSERAGLARRIARLVPLGVVKG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaggatcgtcgaggagaccccgtaccggttccggatcgatcgggccggcgcgatgcgc
gtacccgggatcgtcttcgccgcccggtccctgctccccgtcgcggagggggacgaggcg
ctcacccaggtcgccaacgtcgcgacgctgcccggcatcgtcaccgcgtcgttcgccatg
ccggacgtgcactggggttacggctttcccatcggcggggtcgcggcgacggacatcgac
gacggcggcgtcgtctccccgggcggcgtgggcttcgacatctcgtgcggcgtgcggctc
ctgatcgcacgcgacgcggaccggtccgccctcgcgtcgcgcctgggtgtgttgatggac
cggctcggtcgcgtcgtaccgcgcggcatggagacccggggcgtgtgggaactcccggac
cgtaccgtgttgcggcaggtgctcgcgggcggcgcccgcttcgcggtggagcaggggcac
ggggtcgcccgcgacctcgagcggtgtgaggaccgtggcgtgttggacggcgccgacccg
gacgcggtgagcgaccgtgccgtggagcggggcctcggtcagctcggcagcctcgggtcg
ggaaaccacttcctcgaggtccaggccgtcgagcgggtcttcgatccggacaccgcgcgg
ctgatggggctcgacgtgggcacggtgtgcgtgatgatccactgcggatcccgcggcctg
ggccaccagatttgcaccgaccatgtacgtgagatgggtaaggcaatgggccgctatggg
attcacgtccccgaccggcagctggcgtgcgttccggtccggtcgccggagggggaggcc
tatctcggggccatggtggcggcggccaactacggccgggccaaccggcagttgctcacc
gaggcggcccgccgggtcttcgaggaaacggccggcacgaccctcgaccttctctacgac
atctcgcacaacctggcgaagatcgagcggcacgaggtcggcggccgggtccgcgcgctg
tgcgtgcaccgcaagggcgcgacgcggtccctgccgccggaccaccccgacgtgcccgcc
gacctcaccgatgcagggcagcccgtgctcatccccggcacgatgggcaccgcgtcgtac
gtgctggccggtgtcgccgggaacccggcgttctactccaccgcgcacggggccggtcgg
gtgcagagccggcaccgtgctgcccggcacaccgacggccgggcggtgcgcgacgcactc
gagacgcacggggtgctcgtgcggggaagctcgtggcggggactcgccgaggagaagccg
gaagcgtacaaggacatcgacgcggtggcggaggtgagcgaacgtgcgggcctggcccgc
cggatcgcccggctcgtgccgctcggcgtcgtcaaggggtga
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