Rhizobium anhuiense bv. trifolii: NE851_02430
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Entry
NE851_02430 CDS
T08535
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
raw
Rhizobium anhuiense bv. trifolii
Pathway
raw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
raw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NE851_02430 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
raw03400
]
NE851_02430 (ligD)
Enzymes [BR:
raw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NE851_02430 (ligD)
DNA repair and recombination proteins [BR:
raw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NE851_02430 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
UTS88433
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All DBs
Position
pRA_T24_1:491461..494106
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AA seq
881 aa
AA seq
DB search
MATDKLSTYRSKRDFQKTAEPSGEKRLARSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKMSPE
QALAKGDFKFTLEGKRLHGSFVLVRMRNDRDRGKRTNWLLIKHHDEFSVDENGAAILEEN
QTSVASGRTMEMIATGRGRKPKPFMVEGGDVQADAVWDSNQGLAAEERKEDDRAGRKSKT
VTTVDLPDFIAPQLCQTVERPPPGTGWIHEIKFDGYRIQMRVLDGETTLKTRKGLDWTGK
YPEIAQAASALPDAIIDGEICALDESGAPDFAALQAALSEGRTGELVYFAFDLLYEGGED
LRSLPLVERKERLQSLLSDAGSDPRIRFVEHFETGGDAVLRSACKLSLEGIVSKQADAPY
QSGRTESWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAKKVE
TLLPKLEALETVKSPFTGIGAPKKEAEVKWLKPELVAEIEFAGWTADGIVRQAAFKGLRT
DKPAKEVKAERPAKPAQTDVPQPAAETKARPVRRKGAKAEVMDVLISNPDKPLWPDANDG
KPVTKEELARYYEAVGSWLIEHIKGRPCSIIRTPDGVGGEQFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCEPHKPEVPGRLVFDLDPGPGVPFSEVVS
AAREMRDRLDELGLISFCKTTGGKGLHVVTPLAVDKSEPLSWAQAKGFAHDVCQQMARDN
PQLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLSWTQVKSGLDPK
RFTIRTVPALLSKSSAWEDYCDGQRPLEQAMKRLAKARVAA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccacggacaaactatcgacctatcggtcgaagcgcgattttcagaaaaccgccgaa
ccgagcggtgaaaagcgcctcgcgcgcagcaatcgccgtcgcttcgtcatccagaaacat
gatgctacccgcctgcattacgacctcaggctcgagctcgatggcgtcttcaagtcgtgg
gccgtcacgaaggggccgtccctcgatccgcatgacaagcggctggccgtcgaggtcgaa
gaccacccgctcgactatggtgatttcgaaggcaccattccgaaaggccagtatggcggc
ggcacggtcatgctctgggatcggggctattgggaaccggaaggcaagatgagcccggag
caggccctggcgaaaggcgatttcaagtttacgctggagggcaaacggctgcacggcagc
ttcgtgctggtgcgcatgcgcaacgatcgcgaccgcggcaagcggacaaactggctgctg
atcaaacaccacgacgagttctccgtcgacgagaacggcgcggccatacttgaggaaaac
cagacatcagttgcctccggacgtacgatggagatgattgccacgggaaggggacgaaaa
cccaagcctttcatggtcgagggcggcgacgttcaggccgatgccgtctgggacagcaat
cagggactggcggccgaagagcgaaaagaggatgacagggccgggcgaaaatcgaagacg
gtcacaacggtcgatctgcctgatttcattgcgccgcagctttgccaaaccgtggagcgt
ccgccccccggcaccggctggattcacgagattaagttcgacggctacaggatccagatg
cgggtgctggatggcgagacgacgctgaagaccaggaaaggactcgactggaccggcaag
tatcccgagattgcccaggcagcgtcggccctgccggacgccatcatcgatggcgagatc
tgcgcactcgatgaaagcggcgcgccggattttgcagccctgcaggcggctctctcggaa
ggcaggaccggcgagctcgtctatttcgcattcgatcttctctatgagggtggcgaagat
ttgcggtccttgccactcgtcgagcgtaaggagcggcttcaaagccttctgtccgacgcc
ggcagcgatccgcgcatccgtttcgtcgagcatttcgaaacgggcggtgatgcggtcctt
cggtctgcctgcaaactgtcactggaaggcatcgtctcgaaacaggcggatgcaccctat
caatccggccgcaccgaaagctgggcaaagtcgaaatgccgcgctggccacgaagtcgtg
atcggcgcctatgccaagaccaacggtaaattccgatctctgctggtcggcgtctaccgg
ggcgaccacttcgtttatgtcggccgcgtcggcaccggatatggtgcgaagaaggtggaa
acgctgcttccgaagctggaggcgctcgagacggtgaaatcgcctttcaccggcatcggc
gcgccgaaaaaggaggccgaggtcaagtggctgaagccggagctcgtggcggaaattgaa
ttcgcaggctggacggccgacggtattgtccggcaggcggcgttcaaggggctgcgcaca
gacaagccggccaaggaggtcaaggccgaacggccggcgaaacccgcgcagacggacgtg
ccgcagccggcggcggagacgaaggccaggccggtcaggcgaaagggcgccaaggcggag
gtcatggacgtgctgatctccaaccctgacaagccgctgtggccggatgccaatgacggc
aaacccgtcaccaaggaggagctggcccgttactacgaagcggtcggttcctggctgatc
gagcacatcaagggacgtccatgttccatcatccggacacccgacggggtcggcggcgag
cagttcttccagcgccatgctatgcccggcacctccaacctgctcgaactggtcaaagtc
ttcggcgacaaaaagccctatctgcagatcgaccgggtcgagggtctggctgccgtcgcg
cagatcggcgccgtcgaactgcatccctggaattgcgagccgcataagcctgaggtgccg
ggacgactggtcttcgacctcgatccaggtccgggtgtgcccttctccgaggtcgtttcc
gcagcccgcgaaatgcgcgaccgtctcgacgaactgggcctgataagcttctgcaagaca
accggcggcaagggcctgcacgtcgtcaccccgcttgccgtcgacaagagcgagccgctt
tcttgggcgcaagcgaagggcttcgcgcatgacgtctgccaacagatggcgcgcgacaat
ccgcaactctatctgatcaagatgacgaagagcctgaggaacggccgcatcttcctcgac
tatcttcgcaacgaccgaatggcaaccgcggtggcgccgttgtcgccgcgggctcgaccg
ggcgccactgtctcgatgccgttgagctggacgcaggtcaaatccggcctcgaccccaag
cgctttaccatccgcactgttccggcgcttctgtcgaaatcgtcggcttgggaggactat
tgcgacggccagcggccgctggagcaggcgatgaagcgcctcgcaaaggcccgggtggcg
gcttga
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