Rhizobium anhuiense bv. trifolii: NE851_18490
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Entry
NE851_18490 CDS
T08535
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
raw
Rhizobium anhuiense bv. trifolii
Pathway
raw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
raw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NE851_18490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raw03019
]
NE851_18490
03009 Ribosome biogenesis [BR:
raw03009
]
NE851_18490
Enzymes [BR:
raw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NE851_18490
Messenger RNA biogenesis [BR:
raw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NE851_18490
Ribosome biogenesis [BR:
raw03009
]
Prokaryotic type
rRNA processing factors
NE851_18490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
UTS92943
LinkDB
All DBs
Position
complement(2010993..2013869)
Genome browser
AA seq
958 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSKQDQP
DVGIVPAKAPEAAAVTEETTAAEAAASPEAADEAPAKKARPRRSRKKVTEPVAETTATED
AVPTDVEAEGASTVDNEDDGSTGGAMAAMVETDEISEDVDTSKRRHDDDDDDDDHGEEEV
IESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLA
GRYSVLMPNTARGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKR
DFEYLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEIIVAGEDGYREAKD
FMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSID
VNSGRSTREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKL
KECLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHVRSQSSVALHV
LRGIEEYLLKNTTHNITVRTTPDIALYLLNHKRQTIIDYESRFGVAIVIDADGSVGAQHF
AIDRGEAVENPVKIETLFNFAAIPEDDDDDIVIEVDEEEDEELEEKPAAAERPAAARSEG
EGDSNRKRKRRRRRRGRNGNAEQPVSAAGEAGDEDEDGDDEGGEGDENTEATPETRAESE
ESQRRKRRRRGKRGGRRNRAEDGSELTAGEAGEDNGGDEDEGDDVSNDGAPGEAVAVEAI
AEQADEAQPAMAAVESAVVITEDVKPARSRGRRKPAAAPVEEPVAETAPVVEAEPELVEA
SADLETSVQEEAKPVRANRESNISSSEPTVKSTTRVENGDGDDGKPKKAGWWQRRGFF
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgatgcgtctcacgaggaagagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagaatttgacttcgagtcccagcacaagaagcagatccgcggc
aacatctatcttgcaaaggtaacgagggtcgagccctcgctgcaagccgccttcgtcgat
tacggcggcaaccggcacggcttcctggccttcgccgaaatccatcccgactattaccag
ataccgcttgccgatcgtcaggcactgcttcgtgccgaagccgaggagcatcgccgcgac
gaagatgtcgagcatgtcgaaaccgcgccgatggtcgatctttccaagcaggatcagccg
gatgtcggcatcgttccggcaaaggcgccggaagcggctgccgtaacggaagagacgaca
gcggcagaggccgcggcatcgcccgaggccgcagacgaagcgccggccaagaaggcaagg
ccgcgccgcagccgcaagaaggtgaccgaaccggtcgccgaaacgaccgcgaccgaggac
gccgttcccacagacgtcgaagccgaaggcgcttcgaccgtcgacaacgaggatgacggc
tcgaccggcggcgcgatggccgccatggtggaaaccgacgagatttccgaggacgtcgat
accagcaagcgtcgccacgatgatgatgacgacgatgacgatcacggcgaagaggaagtc
atcgaatccgtcggcgccgaagacgcgatggaagaagtgccggaccgcgtgcagcgcaag
ccgcgcaagcagtaccgcatccaggaagtcatcaagcgccgccagatcctgctcgtgcag
gtcgccaaggaagagcgcggcaacaagggtgcagcccttaccacctatctctcgctcgcc
ggccgctattccgtcttgatgccgaacacggcgcgcggcggcggcatttcccgcaagatc
accaaccctgccgaccgcaagcgcctgaaggaaatcgcgcgcatgctcgaggtacctcag
ggcatgggcgtcattcttcgcaccgccggcgccaaccgcaccaaggtcgaggtcaagcgc
gacttcgaatatctgatgcgcctgtgggagaacgtacgcacgctgacgctggcgtccacc
gctccctgcctcgtctatgaggaaggctcgctgatcaagcgctcgatccgcgacctctac
aacaaggacatcagcgagatcatcgttgccggcgaagacggctatcgtgaagcgaaagac
ttcatgaagatgctgatgccgagccacgccaaggtggttcagccctatcgcgacatccac
ccgatcttctcgcgctcgggcatcgaagcccagctcgaccgcatgctgcagccgcaggtg
accctgcgttccggcggctacctgatcatgaaccagacggaagcgctggtttcgatcgac
gtcaactccggccgctcgacgcgcgaacactcaatcgaggataccgcgctgcagacgaac
ctcgaagccgcggaagaaatcgcccgccagcttcgcctgcgcgaccttgccggcctgatc
gtcatcgacttcatcgacatggaagaaaagcgcaacaaccgcgccgtcgagaagaagctg
aaggaatgcctgaagaacgaccgcgcccgcatccaggtcggccggatctcgcatttcggc
ctgctcgaaatgtcgcgccagcgcatccgcgcttcggttctcgaatcgaccacgcaggtg
tgctcgcattgcggcggcaccggccatgtgcgttcgcagtcctccgtcgcgctgcatgtg
ctgcgcggcatcgaggaatatctgctgaagaacaccacgcacaacatcaccgtgcgcacc
actcctgacatcgcgctctatttgctcaaccacaagcgccagacgatcatcgattacgaa
agccgtttcggcgtcgcgatcgtcatcgacgcggacggttcggtcggtgcgcagcatttc
gcgatcgatcgcggcgaagccgtggaaaacccggtcaagatcgaaacactcttcaacttc
gcagccattcccgaggatgacgacgacgatatcgtcatcgaagtggatgaagaggaagac
gaagaactcgaggaaaagccggccgctgccgaacgccccgcagcagcgcgctcggaaggc
gaaggtgacagtaaccgcaagcgcaagcgccgcaggcgccgccgcggccgcaacggcaat
gccgagcagccggtatcggcagcaggcgaagccggtgacgaggatgaggatggcgacgac
gagggcggcgaaggtgatgaaaacaccgaagccacacccgagacgcgcgctgaaagcgag
gaatcgcagcgccgcaagcgccgccgtcgcggcaagcgtggcggtcgccgcaatcgcgcc
gaggatggctccgagctgacggccggcgaagccggtgaagacaatggcggcgacgaggac
gaaggtgacgacgtttcgaacgacggcgctcctggtgaagccgtagctgtcgaggcgatt
gccgagcaggctgacgaagctcagcccgcgatggcagccgtcgagagcgcagtggtcatc
accgaagatgtgaagcccgcccgcagccgcggccgccgcaaaccggcggcagcgccggtc
gaggaaccggtggcggagaccgcacctgtggtcgaggcagaaccggagttggtggaagcc
tccgccgatctcgaaacatcagtccaggaagaggcaaagccggttcgcgccaaccgcgaa
tccaatatctcctcctccgagccgacggtgaaatccaccacccgcgtcgagaatggcgac
ggcgatgacggcaagccgaagaaagccggctggtggcagcgccgtggcttcttctga
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