Rhizobium anhuiense bv. trifolii: NE851_20790
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Entry
NE851_20790 CDS
T08535
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
raw
Rhizobium anhuiense bv. trifolii
Pathway
raw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
raw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NE851_20790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
raw03400
]
NE851_20790 (mfd)
Enzymes [BR:
raw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NE851_20790 (mfd)
DNA repair and recombination proteins [BR:
raw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NE851_20790 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UTS89055
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All DBs
Position
2444269..2447772
Genome browser
AA seq
1167 aa
AA seq
DB search
MIPGFDAKKLAAIAEPLTIGNVPAGLETLLLAELARTGEPVAYVMSDGHRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQK
VAPQDVIESLSFSARPGNQLRMDDLAGRLERNGFERVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTIGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRIVIDHTVREAAEERSKL
VFDYYDARLNSGQPAKGQVNQGTPYKPVTPGQLYLDSKLFVKTLDALGAIRISPFNEHEG
EARRVVNVDARQGQRWARSNAEGGGDAERINIFDVVVKHIADRRAAGAKVLVTAWTEGSL
ERLLQVLNEHGLEKVKPVEALKDVGSLARGEAAAAVLSLESGFEAGDLVVIGEQDILGDR
MVRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFVGLRTIEAAGAPHACLELQYADE
AKLFLPVENIDLLSRYGGEGTDAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLT
RHAPMLTTPDGLYDEFAARFPYDETEDQDNAIEAVRSDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPVRVQQASRLVGAKELALTKK
EVADGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCP
RLADLEDISAFLQSDVPELKVAIAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGW
SPQISVGTTVMIPENYVPDLHLRMALYRRLGEVTELKEIDGFGAEMIDRFGPMPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRPDHSLF
LTRDLPTPEKRLQGAAVIMTQLAEMAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggccattgccgagccgctgacgatcggc
aatgtgccggcaggtctggagacgctgctgctcgccgagctcgcccgaacgggagagccg
gtcgcctatgtcatgtcggacggccaccgcatggccgatctcgaacagatgctgggcttc
gtcgcccccgacattccggttctcaccctgccggcctgggactgtctgccctatgaccgc
gtctcgccgagcgccgacacgtcggcccgccggctagccgcacttggcggcctgattgcc
catcgcaagaagccgcatgccgcaatcgtgctcgtcaccgccaatgccatgctgcagaag
gtggcgccgcaggatgtcatcgagagcctcagcttttcggcccgtcccggcaaccagctg
cgcatggacgatctcgccggccgcctggagcgcaacggctttgaacgcgtcgcgaccgtt
cgcgaggtcggcgaatatgccgtgcggggcggcattctcgatgtcttcgtgccgggttcg
gaagagccggtccgcctggatttcttcggcgacacgctggaatcgatccgcagcttcgat
ccggccagccagcgcacgatcgggcaggtgcgctccctcgatctcaatccgatgagcgag
gtgacgctgacgccggatacgatcagtcgcttccgcaagaattacctttcggctttcggc
gccaccacccgcgacgacgcgctctatctcgccgtgtccgaaggccgccgttaccccggc
atggagcattggctgccgctcttctacgagaagctcgataccgtcttcgattatctcagc
ggcttccgtatcgtcatcgaccacacggtgcgcgaggcggcggaggagcgctccaagctc
gttttcgactattacgatgcccgcctgaattccggccagccggccaagggccaggtgaac
cagggcacgccctacaagccggtgacgccgggccagctctatctcgacagcaagcttttc
gtcaaaaccctcgacgcgctcggcgcaatccgcatcagccccttcaacgagcatgagggc
gaggcgaggcgggtcgtcaatgtcgatgcccgccagggccagcgttgggcccgttcgaac
gccgagggcggcggcgatgccgaacgcatcaacatcttcgacgtcgtcgtcaagcatatt
gccgatcggcgtgccgccggcgcgaaagtgctggtcaccgcctggaccgaaggttcgctg
gaacgcctgctgcaggtgctgaacgaacatggcctggaaaaggtcaagccggtcgaggcg
ctgaaggatgtcggttcgctggcgagaggcgaggcggccgcggccgtgctcagcctcgaa
tccggcttcgaggccggcgacctcgtcgtcatcggcgagcaggatatattgggcgaccgc
atggtgcgccgctccaaacgccgcaaacgcgccgccgatttcatctccgaggttgcgggc
ctcgatgagggctcgatcgtcgtccatgccgaacacggcatcggccgcttcgtcgggctg
cggaccatcgaggcggccggtgcgccgcatgcctgcctcgagttgcaatatgccgacgag
gccaagctcttcctgccggtcgaaaacatcgacctgctctcgcgctacggcggcgagggc
accgacgcccagctcgacaagctcggcggcggcgcttggcagatgcgcaaggccaagctg
aagaagcgcctgctcgacatggccgatgcactgatccgcatcgccgccgagcgcctgacg
cgccacgcgccgatgctgacgacgccggacggcctctacgacgaattcgccgcgcgcttc
ccctatgacgagaccgaggaccaggataacgccatcgaggcggtgcgctccgatctcggt
gccggccggccgatggaccgcctcgtctgcggcgacgtcggcttcggcaagaccgaagtg
gcgctgcgcgccgccttcgtcgcagcgatgaatggcgtccaggtcgccgtcgtcgtgccg
acgacattgctcgcccgccagcacttcaagaccttttccgaacgtttccgtggcctgccg
gtgcgtgtccagcaggcctcgcgcctcgtcggggccaaggagctggcgctgaccaagaag
gaagtcgcggacggcaagaccgatatcgtcgtcggcacccatgcgctgcttggcgccggc
atcaaattcgccaatctcggcctgctcgtcatcgacgaagagcagcatttcggcgtcaag
cacaaggagcggctgaaggagctgaagagcgacgtgcacgtgctgacgctgtctgcaacc
ccgatcccgcgcacgctgcagcttgccatgaccggcgtgcgcgaattgtcgctgatcacc
acgcccccggtcgaccgcatggcggtgcgcaccttcatctcgccgttcgacagtcttgtc
atccgcgagacgctgatgcgcgagcattatcgcggcggccagagcttctatgtctgcccc
aggcttgccgacctcgaggatatcagtgccttcctgcagtcggatgtgccggagctgaag
gtggcgatcgcccatggccagatgccggccggcgaactcgaagatatcatgaacgccttc
tatgaaggccgctacgacgtgctgttgtcgaccaccatcgtcgaatccggcctcgacgtg
cccacagccaacacgctgatcgttcaccgcgccgatatgttcggcttagcccagctctat
cagctacggggccgcgtcggccgctcgaaggtgcgcgcctttgcgctcttcaccctgccg
gtcaataaggtgctgacggcaaccgccgagcgccgcctcaaggtgctgcaatcgctggat
acgctcggcgccggctttcagctggcgagccacgacctagacatccgcggcgccggcaac
ctgcttggcgaggagcagtccggtcatatcaaggaggtcggtttcgagctctatcagcag
atgctggaagaggcggtcgccgaggtcaagggcgtcgacgagatccacgacaccggttgg
tcgccgcagatctccgtcggcacgacggtgatgatcccggaaaattacgtgccggacctg
catctgcgtatggcgctctaccggcgtctcggcgaagtcaccgagctcaaggagatcgat
ggcttcggcgccgagatgatcgaccgcttcggcccgatgccgatcgaagtccagcatctc
ttgaagatcgtctatatcaagtcgctctgccgtaccgccaatgtcgaaaagctcgatgcc
ggcccgaaaggcgtcgtcgtgcagttccgcaacaaggaattccccaatccggcaaacctc
gtcggttatatcggcaagcagggcacgatggcgaagatccgccccgatcacagcctgttc
ctgacccgcgacctgccgaccccggaaaaacgcctgcaaggcgccgcggtgatcatgacg
caactggccgagatggcgaagtag
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