Rhizobium anhuiense bv. trifolii: NE851_27480
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Entry
NE851_27480 CDS
T08535
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
raw
Rhizobium anhuiense bv. trifolii
Pathway
raw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
raw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NE851_27480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raw03019
]
NE851_27480
Enzymes [BR:
raw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NE851_27480
Messenger RNA biogenesis [BR:
raw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NE851_27480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
Flavi_DEAD
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UTS93431
LinkDB
All DBs
Position
3807615..3809294
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AA seq
559 aa
AA seq
DB search
MVRSGNSRCGAPKGYALTNFESLGVSKPIVATLFQLGIETPTPIQEHAIPLLLEGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSPL
RINVVVGGVSINKQQLQLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDL
GFVHDLRKIAKMVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVGGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDITVASGEPPANMNATPRRANGNGNNRNRNGGQGRES
NGRGEGRGDQNRSEHRGNRQERRPRPERPTSRNEDFRGQRRGEVTPDLGPDNDLVATSDF
RPSAKPQRPAHHGAHANGEPSGHHRGNNRHAHGRPARKHGEDRGPQQAQGGEPRRDGNGG
NRRGGSGSRNGSGQRRERA
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcaatagtcgttgtggcgccccgaaaggttatgccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgctactttgttccagctcggcatcgaaacg
ccgacacccatccaggaacatgccattcctctcctcctcgaaggccgcgacctgatcggc
ctcgcccagaccggcacaggcaagaccgccgctttcggcctgcctctcatcgaaaagctg
ctcgccgacgaacggcgtcccgacaaccgcacgacgcggacgctgatcctggccccgacc
cgcgaactggtgaaccagatcgccgagagcctgaagaagttcatccgcaagtcgccgctg
cgcatcaatgtcgtcgtcggcggcgtttcgatcaacaagcagcagcttcaactcgaaaag
ggcaccgatatcctcgttgccacgcctggccgcctgctcgacctcgtcaatcgccgcgcg
atcacgctgaccacggtccgctatctcgtgctcgacgaagccgaccagatgctcgacctc
ggcttcgtgcatgatctgcgcaagatcgccaagatggtgcccaagaagcgccagaccatg
ctcttctcggccaccatgccgaaggcgatcgccgatctcgccggcgaatacctcgtcgat
cccgtcaaggtcgaagttacgcctccgggcaaggctgccgacaaggtcgaacaatacgtc
catttcgtcggcggcaagaacgacaagacggaactgctccgcaagtcgctgactgaaaac
ccggatggccgcgccatcgtcttcctgcgcaccaagcacggtgcggaaaagctgatgaag
catctcgagaacatcggctattccgttgcctcgatccatggcaacaagagccagggtcag
cgcgaacgggcgctgaaggccttccgcgacggcagcatcaagacgctgatcgccaccgac
gtcgccgcccgcggcatcgatatcccggccgtcagccacgtctacaactacgatctgcct
gaggtgcccgacgcctatgtccaccgcatcggccgcacggcgcgcgccggccgcgacggc
atcgccatcgccttctgcgcccctgacgaagccaagctgctgcgtgacatcgaacgcctg
atgggcatcgatatcaccgtcgcaagcggcgaacctccggccaacatgaacgccacaccc
cgtcgtgccaacggcaacggcaacaaccgcaatcgcaatggcggccagggtcgcgaaagt
aatggtcgcggcgaaggccgtggcgaccagaatcgctccgagcatcgcggcaaccgccag
gagcgccgcccgcgccccgagcgcccgaccagccgtaacgaggatttccgcggccagcgc
cgcggcgaagtgaccccggatctcggtcctgataacgatctggtcgcaacctccgacttc
cgcccctcggcaaagccgcagcgtccggcgcatcacggcgcccacgccaatggcgaaccg
agcggtcatcaccgcggcaataatcgccatgcccacggccgcccggcccgcaagcacggc
gaagaccgcggcccgcagcaggcccagggcggcgaaccacgccgcgacggcaacggcggc
aaccgccgcggtggctcaggctcccgcaacggcagcggccagcgccgcgaacgcgcctga
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