Radiobacillus kanasensis: KO561_00405
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Entry
KO561_00405 CDS
T08696
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rax
Radiobacillus kanasensis
Pathway
rax03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KO561_00405 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rax03021
]
KO561_00405 (rpoC)
03400 DNA repair and recombination proteins [BR:
rax03400
]
KO561_00405 (rpoC)
Enzymes [BR:
rax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KO561_00405 (rpoC)
Transcription machinery [BR:
rax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KO561_00405 (rpoC)
DNA repair and recombination proteins [BR:
rax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KO561_00405 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UFT99487
LinkDB
All DBs
Position
78335..81949
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEFMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYIVTDSGDTALEKKQLLSEKEYRAYRDKYGQSFQAQMGAEAIRKLLQ
DIDLDKEVGLLKEELKTAQGQRRTRAIKRLEVLEAFRNSGNEPSWMILDVLPIIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MAVELFKPFIMKELVAKGLAHNIKSAKRKIERLHPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYVTLEREGAVGEGMVFKDLNEALIAYQNGYVHLHTRIAVD
ASSLGNVTFTEEQSKKLLLTTVGKLIFNETLPSSFPYMNEPTQANLEVKTPEHYFVEKGT
NIREEIAKREIIPPFKKGILGNIIAEVFKRFKISETSKMLDRMKDLGFSYSTKAGITVGV
SDIVVLADKQVILEEAQTKVDKVLKQFRRGLITEEERYDRVIAIWSKAKDDIQEKLMKSL
NPRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLTVQSIKEGTEMIEPLI
DRLIGRTSFQTIYHPETKELLAERNEVITEDKAKQIVDAGIEQLMIRSVFTCNTKHGVCK
KCYGRNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISELYGTVQDINEVKDKQEIVVQGAVETKSYTAPYGARVKVTIGDEVIAG
QELTEGSVDPKELLKIQGIDGVQEYLLKEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVA
DAGDTEVLPGSLLEIHQFRDANKEVLLQGNQPAVGRPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQKYRKITAKTDEPVDEVIEPNFTE
EITQ
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgttaataattttgaatttatgaaaattggtttagcttcaccggataaaatc
cgttcatggtcttttggtgaagtcaaaaaaccagaaacaatcaactatcgtacactaaag
ccggaaaaagatggtctattctgcgaaagaattttcggaccgcaaaaggactgggaatgt
cactgtggtaaatacaaacgcgtgcgctataaaggcgttgtttgtgaccgttgtggggta
gaagtaacaaaagcaaaagtacgtcgtgagcgtatggggcacattgagcttgctgcccct
gtctctcatatctggtattttaaaggtatccctagtcgtatgggtcttgtacttgatatg
tctccaagagctttagaagaagttatttattttgcggcatatatcgtaacagactcagga
gatacagcactcgagaagaaacagcttctttctgaaaaagagtatcgtgcttatcgcgac
aaatatggccaatcgttccaagctcaaatgggagcagaagcgattcgtaagcttcttcaa
gatatcgatcttgataaagaagtagggttgctaaaagaagaactgaaaacggctcaagga
caaagaagaacacgtgcgattaaacgtctagaagtattagaagcattccgtaattcgggg
aatgagccttcttggatgattcttgatgtacttccaatcattccacctgaactacgtcct
atggttcagttagatggtggaagattcgcaacatctgacttaaatgatttatatcgtcgt
gttataaaccgtaataaccgtttgaaacgtttattagatcttggagcacctagcattatc
gtgcaaaacgaaaagcgtatgcttcaagaagcggtagatgcattgattgataacggtcgt
cgtggacgtcctgttacagggccgggtaaccgtccgttgaaatctttatctcacatgcta
aaaggaaaacaaggtcgtttccgtcaaaacctattaggtaaacgtgtagactattctggt
cgttccgttatcgttgtaggtccacacttgaaaatgtatcaatgtggtctgccaaaagaa
atggcagtcgaactattcaaaccgtttattatgaaagagctagtagcgaaaggccttgct
cataacattaaatcggcaaaacgcaagatcgaacggttacacccagaagtttgggatgta
ttagaagaagtaatcaaggagcaccctgtattactaaaccgcgcccctacgcttcaccgt
ttagggatccaagcgtttgagccaacgttggtagaaggacgtgctattcgccttcaccca
ttagtatgtacggcatataacgccgactttgatggagaccaaatggctgtacacgttcca
ttatctgcggaagcacaagctgaagctagaattcttatgctggctgcacaaaacatctta
aatccgaaagatggtaaaccagttgtaacaccatcacaggatatggtattggggaactac
tatgtaaccctagaacgtgaaggtgcagttggcgaaggtatggtattcaaggatttaaat
gaagccttgattgcttaccaaaatggttacgtacacttgcatactcgtattgcggtagac
gcaagttccttaggaaatgtaacgtttactgaagagcaatctaaaaaactgttgcttaca
acggttggtaaacttattttcaacgaaacgttacctagctctttcccttacatgaatgag
ccaacacaagcaaatctggaagtgaaaacaccagaacattactttgttgaaaaaggcaca
aacattagagaagagattgccaagcgagagattatccctccattcaagaagggtatctta
ggtaacattatcgcagaggtatttaaacgatttaagattagtgaaacatcgaaaatgctt
gaccgtatgaaagacttaggctttagctactctacgaaagcgggtattacggttggggta
tctgatatcgtcgtattagccgataaacaagttatcctagaggaagcgcaaacgaaagta
gataaagtgttgaaacaattccgtcgtggtttgattacggaagaagagcgttatgatcgt
gttatcgctatctggtcgaaggcgaaagacgatattcaagaaaaactaatgaaatcacta
aacccacgtaaccctatctttatgatgagtgactctggagctcgtggtaacgcatctaac
tttacacagctagctggtatgcgtggtctaatggccaacccggctggtcgaatcattgag
ttaccgatcaagtctagtttccgtgaaggtttaacggtattagagtactttatttctact
cacggtgctcgtaaaggtctagcggatacagccttgaaaacagccgattctggttactta
actcgtagactagttgatgttgctcaagacgtaatcgtgcgtgaagaagattgtggtaca
gatagaggtcttactgttcaatcgattaaagaaggaacagaaatgatcgagccgctaatc
gatcgactcattggtagaacgtccttccagacgatttatcatccagagacgaaagaattg
cttgctgaacgtaacgaagtgattacagaggataaagcaaaacaaattgtcgatgcggga
attgagcagcttatgatacgctctgtcttcacctgtaatacgaagcatggtgtatgtaag
aaatgttacggacgtaacttggcaactggtgacgaggtagaagtaggagaagcggttggt
attatcgcagcacaatccatcggagaaccaggtacacagcttactatgcgtacgttccac
accggtggggtagctggagatgatatcacacaaggtttaccgcgtatccaagagctattt
gaagctcgtaatccgaaaggtcaggctgttattagtgaactctacggtaccgttcaggac
atcaacgaagtgaaagacaaacaagaaattgttgtccaaggtgcagtggaaacaaaatct
tatacagctccatacggcgcgcgagtaaaagttactattggtgatgaggttattgcgggt
caagaactaacagaaggttctgtagatccaaaagaactattaaaaatccaaggtatcgat
ggtgtgcaagaatacctactcaaagaagtacaaaaagtttaccgtatgcaaggggtagaa
attggagataagcacgtcgaagttatggtaagacaaatgcttcgtaaagtacgtgttgca
gatgctggggatacagaagtattaccaggctctctactggaaattcaccaattccgagat
gcgaacaaggaagtgttgttacaaggtaaccaaccagctgttggtcgtccagtacttctt
ggtatcacgaaagcatctctcgaaacagattccttcttgtccgctgcttccttccaagaa
actactcgtgtcttgacagatgcagcaattaaaggaaaacgtgacgaactccttggactg
aaagagaatgtaattattggtaagttggttcctgccggcacaggtatgcaaaaataccgc
aagattacggctaagacagatgagccagtagatgaagtaattgaaccaaatttcacagaa
gagattacacagtag
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integrated database retrieval system
