Radiobacillus kanasensis: KO561_02930
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Entry
KO561_02930 CDS
T08696
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rax
Radiobacillus kanasensis
Brite
KEGG Orthology (KO) [BR:
rax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rax03009
]
KO561_02930 (rlmD)
Enzymes [BR:
rax01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KO561_02930 (rlmD)
Ribosome biogenesis [BR:
rax03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KO561_02930 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
PrmA
MTS
Cons_hypoth95
Methyltransf_11
RrnaAD
CMAS
UPF0020
Methyltransf_23
N6_N4_Mtase
TPMT
FtsJ
PCMT
Methyltransf_32
AIG1
Methyltransf_12
Ubie_methyltran
POL2_thumb
Motif
Other DBs
NCBI-ProteinID:
UFT99934
LinkDB
All DBs
Position
561208..562593
Genome browser
AA seq
461 aa
AA seq
DB search
MAKLKPPVKKNQTIELSFVDLTHDGSGVGKIDGYPLFVPYGLPGETAKVKVVKVNKNFGF
GKLLELNEVSPDRVEPPCDVYVQCGGCQLQHMSYDLQLEMKRKQVETSLKKIGHIEKVPV
HPTIGMEDPWRYRNKVQIPVAERHGELITGFYQKRSHNIIEGMDRCVITSEINDRMVEAV
RRMADRLKIQAYDEEKHRGVLRHIMVRTGQATNETMIVLITRTEELPHQEELVKEISETY
PQVKSIIQNVNKDRTNVILGRKTKVLWGNEYIYDNIGDIKFAISAKSFYQVNPPQTKKLY
DKALEYANLQGGETVIDAYCGIGTISLFLAQKAKKVYGVEIVPEAISDAKANARLNHIEN
TEFFVGEAEKVMPWWTAQGLRPDVIVVDPPRKGCEEELLIAMITMKPERIVYVSCNPSTL
ARDLRILEDGGYETKQVQPVDMFPQTGHVECVALMELKLSN
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaattaaaaccacctgtaaagaaaaaccaaacgatagagctatcttttgtcgat
ttaacacatgatggatctggcgttgggaaaatagatggctaccctttatttgttccgtac
ggactacctggagaaacggcaaaggtaaaagtcgtaaaagtgaacaaaaacttcggcttt
ggaaagcttttagaactaaacgaagtaagtccagatagagttgagccaccatgtgatgtg
tacgtgcaatgtggaggatgccagctgcaacatatgagctatgacttgcagctagaaatg
aaacgaaagcaagtggagacatctcttaaaaagataggacacatagaaaaagtcccggtt
catcctacaatcggtatggaagatccatggagataccgaaataaagtgcaaattccagtt
gctgaaagacatggtgaattgattacaggcttctaccaaaaacgtagtcataacattatc
gaaggcatggatcgatgtgtgattacatcagagatcaatgatcgcatggtggaagcagtt
cgtcgcatggccgaccgattaaagatacaagcctatgatgaagaaaaacatcgaggtgtt
cttcgccatatcatggttcgcaccggacaagctaccaatgaaacgatgattgtactgatt
actcgaacggaagagttgcctcatcaggaagaactggtgaaggagattagcgaaacgtat
cctcaggtaaagtccattattcagaacgttaataaggatcgtacgaatgttattcttggt
agaaagacgaaagtgctttggggaaatgagtacatctatgataatattggcgacattaaa
tttgccatctccgccaagtccttttaccaagtgaatcctccacaaacgaagaagctatat
gataaagctttggaatatgcgaatcttcaaggtggagaaacggtgattgatgcttattgc
gggataggtacgatttccctatttcttgcgcaaaaagcgaaaaaggtttacggagttgag
attgttccagaagctatttcggatgcaaaagcaaatgcgcgattaaatcatattgaaaat
accgagttctttgtaggagaagcagagaaggtcatgccttggtggaccgcccaagggtta
cgcccagatgtcattgtagtggatcctcctagaaaaggctgtgaggaagaactgttgata
gcaatgatcaccatgaaacctgaacgaattgtgtatgtatcttgtaatccatctacactc
gctagggatttaagaattcttgaggatggtggatatgagacgaaacaagtacagcctgtt
gatatgtttcctcagactgggcatgtggagtgcgtggcgttgatggagttgaaattgtct
aattaa
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