Rousettus aegyptiacus (Egyptian rousette): 107503721
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Entry
107503721 CDS
T06036
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ray
Rousettus aegyptiacus (Egyptian rousette)
Pathway
ray03013
Nucleocytoplasmic transport
ray03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ray00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107503721 (UPF1)
03015 mRNA surveillance pathway
107503721 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ray03019
]
107503721 (UPF1)
Enzymes [BR:
ray01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107503721 (UPF1)
5.6.2.5 RNA 5'-3' helicase
107503721 (UPF1)
Messenger RNA biogenesis [BR:
ray03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107503721 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
107503721 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
107503721
NCBI-ProteinID:
XP_015987896
UniProt:
A0A7J8BWT6
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
GPVGAGAGVAAGQLDAQVGGPEGILQNGAVDDGVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAAERVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcactttcctggacaccgaggag
acggagctgctcggcgccgacacgcagggctccgagtttgagttcaccgacttcactctc
cccagccagacgcaaacgccccccggcggccctggcggtcctgggggtggcggcccgggg
ggtccggtcggtgcaggcgctggagttgcggccggacagctcgacgcgcaggtcggagga
cctgaaggcatcctgcagaatggggccgtggatgacggtgtggccaagaccagccagttg
ttggccgagttgaacttcgaagaagatgaagaggatacttattacacaaaggacctccca
gtacatgcctgcagttactgtggaatacacgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactttgcacaaagatgggcccctgggggagacg
gtcctggagtgttacaattgtggctgccgcaacgtcttcctccttggcttcatccctgct
aaggctgactcggtggtagtgctgctgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcacaatggcagcccctgatccaggaccgctgcttcctg
tcctggctggtcaagatcccttcagagcaggagcagctgcgggctcggcaaataactgct
caacagatcaacaagctagaggagttgtggaaggagaatccttctgctaccttggaggac
ctagagaagccgggggtggatgaggagccgcagcatgtcctcttgcggtatgaggatgcc
taccagtaccagaacatattcgggcctctggtcaagctggaggctgactatgacaagaag
ctcaaagagtcccagactcaagataacatcacagtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagatatgcggctcatgcagggtgatgagatatgcctgcgatacaaaggg
gacctagcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggt
gatgagatcgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacacataac
ttccaggtggactttgtgtggaagtccacctcgtttgacaggatgcagagtgcactgaag
acttttgccgtggatgagacctccgtgtcaggttacatctaccacaagctacttggccac
gaagtggaggacgtgatcatcaagtgccagctgcccaagcgcttcacagcacaagggctg
cccgacctcaaccactctcaggtttatgctgtgaagactgtgctgcagagacctctaagc
ctgatccagggaccaccaggcacggggaagacagtaacctcagccactatcgtctaccac
ctggcacggcagggcaatgggcccgtgctcgtctgtgctccaagtaacatagccgtggat
caactgaccgagaagatccaccaaactgggctgaaagttgtgcggctctgcgccaagagc
cgcgaggccatcgactccccagtgtcattcctagccctacacaaccagatcaggaacatg
gatagcatgccagagctgcagaagctgcagcagctgaaagatgagactggggagctgtcg
tctgctgatgagaagcggtaccgggccctgaagcgcacggccgaaagggagctgctcatg
aatgcagatgtcatctgctgtacgtgtgtgggtgcgggggaccccaggctcgccaagatg
cagttccgctccattttaatcgacgagagcacccaagccaccgagccagagtgcatggtc
cctgtggttctcggagccaagcagctgatccttgtgggtgaccactgccagcttggcccc
gtggtgatgtgcaagaaggcggccaaggctgggctgtctcagtcgctgtttgaacgcctc
gtggtgctgggcattcgtccaatccgcttgcaagtccagtatcggatgcaccctgcgctt
agcgcttttccgtccaacatcttctatgagggttctctgcagaatggcgtcacagcagcg
gaacgtgtaaagaaagggtttgacttccagtggccacaacctgataagccgatgttcttc
tacgtgacccagggccaggaagagatcgccagttcgggtacctcttacctgaataggacg
gaggctgcaaacgtggagaagatcaccacgaagctgctaaaggcaggtgccaagccagac
cagatcggcatcatcacaccctatgaggggcagcgctcctacctggtacagtatatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagattgccagtgtggatgcg
ttccaggggcgtgagaaggacttcatcatcctctcctgcgtgcgggccaatgagcaccag
ggcattgggtttttaaacgaccccagacgacttaacgtggccctgacccgagcacgatac
ggggtcatcattgtggggaaccccaaggccctatccaagcagccactctggaaccacctg
ctgaattactacaaggagcagaaggtgctggtggaggggcccctgaacaacttgcgagag
agcctaatgcaattcagcaagccccggaagctggtcaacaccatcaaccctggagctcgc
ttcatgaccacagccatgtatgacgcccgggaggccatcatcccaggatcagtttatgat
cggagcagccagggtcggccctcgaacatgtacttccagacccatgaccagctcggcatg
atcagcgctggccccagccacgtggctgccatgaacattcccatccccttcaacctggtc
atgccacccatgccacccccggggtactttggacaggctaacgggccagctgcaggccgg
ggcaccccaaaaggcaagacgggtcgtggcggacgccagaagaaccgctttgggcttcct
gggcccagccagacgaacctgcccagcagccaggccagccaggatgtggcgtcacagccc
ttctcgcagggtgccctgacgcagggctatatctccatgagccagccctcccagatgagc
cagcctggcctctcccaacctgaactgtcccaggacagttaccttggcgatgagtttaag
tcccagattgatgtggcgctgtcacaagactccacataccagggagagcgggcatatcag
cacggcggagtgacgggcctgtcccagtactag
DBGET
integrated database retrieval system
