Rousettus aegyptiacus (Egyptian rousette): 107509644
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Entry
107509644 CDS
T06036
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ray
Rousettus aegyptiacus (Egyptian rousette)
Pathway
ray03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ray00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107509644 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ray03019
]
107509644 (MTREX)
03041 Spliceosome [BR:
ray03041
]
107509644 (MTREX)
03009 Ribosome biogenesis [BR:
ray03009
]
107509644 (MTREX)
03016 Transfer RNA biogenesis [BR:
ray03016
]
107509644 (MTREX)
Enzymes [BR:
ray01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107509644 (MTREX)
Messenger RNA biogenesis [BR:
ray03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107509644 (MTREX)
Spliceosome [BR:
ray03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107509644 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
107509644 (MTREX)
Ribosome biogenesis [BR:
ray03009
]
Eukaryotic type
Pre-60S particles
Helicases
107509644 (MTREX)
Transfer RNA biogenesis [BR:
ray03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107509644 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
107509644
NCBI-ProteinID:
XP_015997818
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGTKKDKEKEKGKWKGPPVSAEKAGKRLDGKLQSESTNIA
KTKRDADFEGTDEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNSQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSRESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPV
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagctcttcagcgtgttcgaggacgactcgaccactgcg
cccggaaccaaaaaagacaaggagaaggagaaggggaaatggaaggggccaccagtgtct
gcagaaaaggccgggaaacgtcttgatggtaaattacaatcagagtcaaccaatattgca
aaaaccaagagagatgcagatttcgagggcacagatgaacccatttttggaaagaagccc
agggtagaagagtcaataactgaagacttaagtttggcagacttgatgcccagagtcaag
gtgcaatcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataatagccagtctgttttagtatct
gcacatacgtcagcaggaaaaactgtatgcgctgagtatgccattgcattggccttaagg
gaaaaacaacgtgtaatatttactagcccaattaaggctttgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgacaggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggttatatttgatgaaattcattacatgagagattca
gagcgtggtgtggtatgggaagaaactattattttgcttccagataacgttcactatgtc
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgtcatgtaatttacacagattatcgtcctactccattgcagcactacatt
tttccagctggaggggatggcctgcaccttgtagttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagttcttcgagatgctggtgatttagcaaaaggagat
cagaaggggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagatcgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaagattgcgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtc
gaagaagtattcagtaatgcaattgactgcttgtcagatgaagataaaaagctccctcag
gttgaacatgtacttcctcttttgaagcgggggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattcttttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaacatgccagctagaactgttttatttacaaat
gcacgaaaatttgatgggaaagatttccgatggatttcctctggtgaatatattcaaatg
tctggtcgtgctggaagaagaggaatggatgatagaggaattgtaattcttatggtagat
gaaaagatgagcccaacaattggaaaacaactacttaagggctcagctgaccctctaaat
agtgcttttcatttgacctacaacatggttttgaacttactacgtgtagaagaaatcaat
cctgaatacatgttggaaaaatccttctaccagtttcagcattatagagcaattcccgga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaa
gaaagcgtagtcatctattataagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgttgtagaagtacttctg
cgctgtagcagagaaagcttaaaaaattcagctactgaggctgcaaagccagctaaacct
gatgagaaaggagagatgcaagttgttcctgttttggtgcatctcctatctgctatcagc
agtgttagactttatattcctaaagaccttcgacctgtggacaatagacagagtgtttta
aaatcgatacaggaagttcagaaacgttttcctgatggtgttcctttattagatcctgtt
gatgatatgggcattcaggatcaggggctgaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtatacg
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactaaag
aaagcaagaacagtcttacaaatggatgagctcaaatgtcgcaaacgtgttttaaggaga
ttgggatttgccacttcttctgatgtcatagagatgaaaggacgtgtggcttgtgagatt
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctg
tctgcagaacaagcaacggcactactaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
cgaattgcaaaagtttcagcagaagcaaaattggaaattgatgaggaaacttacctaagc
tcattcaaacctcacttaatggatgtagtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgaccgatgtcttcgaaggcagcataattcgatgtatgaggcgcctg
gaagaactgcttcgacaaatgtgtcaagcagcaaaagctattggaaacactgaactggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctt
tacttatag
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integrated database retrieval system
