Rousettus aegyptiacus (Egyptian rousette): 107516030
Help
Entry
107516030 CDS
T06036
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ray
Rousettus aegyptiacus (Egyptian rousette)
Pathway
ray03030
DNA replication
ray03410
Base excision repair
ray03420
Nucleotide excision repair
ray03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ray00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107516030 (LIG1)
03410 Base excision repair
107516030 (LIG1)
03420 Nucleotide excision repair
107516030 (LIG1)
03430 Mismatch repair
107516030 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ray03032
]
107516030 (LIG1)
03400 DNA repair and recombination proteins [BR:
ray03400
]
107516030 (LIG1)
Enzymes [BR:
ray01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
107516030 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
107516030 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
107516030 (LIG1)
DNA replication proteins [BR:
ray03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
107516030 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
107516030 (LIG1)
DNA repair and recombination proteins [BR:
ray03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
107516030 (LIG1)
NER (nucleotide excision repair)
Other NER factors
107516030 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
107516030 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DUF1685
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
107516030
NCBI-ProteinID:
XP_016010909
LinkDB
All DBs
Position
Unknown
AA seq
904 aa
AA seq
DB search
MQRSIMSFFYPKTEGKAKKPEEETPSGIRETEPPPKVALKERNGVVPESDSPVKRPGRKA
ARVLCSEGEEEEDGACTPPRGQKPAAASPRERSPAPPSASPERASPPGIPKRRTARKQLP
KRTHEGEQSEDKDREAKRTKEEEAETPTESPSESEGAEEKEVEEGDLPTVPPELPEACKA
EPPAGSSSEPGAAVGQGLQDEDRAKPPARAPKTLSSFFAPRKLEVKTEAKEEGSGAPRKE
APKGPLEPSGYNPAQNNYHPVEDACWKQGQKVPYLAVARTFEKIEEVSARLRMVETLSNL
LRSVVALSPSDLLPILYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAE
KGDVGLVAENSRSTQRLMLPPPALTASGVFAKFQDIARLTGSTSTAKKIEIIKGLFVACR
HSEARFIARALSGRLRLGLADQSVLAALAQAVSLTPPGQGFPPAVVDAGKGKAAEARKTW
LEEQGMILKQTFCEVPDLDRVVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVL
KRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTS
FILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPL
SRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVRDSCEGLMVKTLDVDATYEI
AKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEDSEELQAICK
LGTGFSDDALQELHHGLQALVLPSPRSYVRADGAVAPDHWLEPSAVWEVKCADLSLSPIY
PAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVACLYRKQSQVQNQQGSQSDSDP
EDFY
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttctaccccaagacagagggcaaagcgaagaagcca
gaggaggagacgcccagcggcatcagagagacagagcccccgccaaaggtggcgctgaag
gagaggaatggagtggtgcctgagagcgactctccggtgaagaggccggggaggaaggca
gcccgcgtcctgtgcagcgagggtgaggaggaggaggatggagcctgcacgcccccccgg
ggccagaagccggccgcggcctcaccccgggagcgcagccccgccccgcccagcgcatcg
ccggagcgggcctccccaccgggcatcccgaagcggcgcacagctcggaagcagcttcct
aaacggacacatgagggagagcagagcgaggacaaggacagagaagccaagaggacgaag
gaggaagaagcagagaccccaacagaaagtccctcagagtcagaaggggccgaagagaag
gaagtggaagagggggacctgcccacggtgccccccgagctccctgaggcctgcaaagca
gagcccccagcaggaagcagttcagagcccggggcagccgtgggccaagggctgcaggat
gaggaccgggcgaagcctcctgccagggctcccaagacgctcagcagtttcttcgccccc
cggaagctggaagtcaaaacagaagcgaaagaagaggggtctggcgccccaaggaaggag
gcacccaagggcccgctcgaaccgtccggctacaatcctgcccagaacaactaccatcct
gtcgaagacgcctgctggaagcagggccaaaaggtcccctatctggctgtggcccggacg
ttcgagaagatcgaggaggtttcggctcggctgcggatggtggagacgctgagcaacctg
ctgcgctccgtggtggccctgtcgccttccgacctcctccctatcctctacctcagcctc
aaccacctggggccgccccagcagggcctggagcttggcgttggggacggtgttcttctc
aaggcggtggcccaggccacaggtcggcagctcgagtctgtccgggctgaggcagctgag
aagggcgacgtgggcctggtggctgagaacagccgcagcacccagaggctcatgctgccc
ccgcctgccctcaccgcctccggggtcttcgccaaattccaggacatagcccggctcact
ggcagcacgtccacagccaagaagatagagatcatcaaaggcctcttcgttgcctgccgc
cactcggaagcccggttcatcgccagagccctgagcggacggctgcgcctcgggctggcg
gaccagtcggtgctggccgcgctcgcccaggccgtgagcctcacgccacccgggcaaggc
ttccccccggccgtggtggatgccgggaagggcaaggcggcagaggctaggaagacgtgg
ctggaggagcagggcatgatcctgaagcagacgttctgcgaggtgcctgacctagaccgt
gtcgtccccgtgctgctggagcacggcctggagcggctcccggagcactgcaggctgagt
ccaggggtccccctgaagccaatgttggcccacccaacccggggtgtcagcgaggtcctg
aagcgctttgaggaggcagctttcacctgcgagtacaaatacgatgggcagagggcgcag
atccatgtcctggaaggcggggaggtgaagatcttcagcaggaatcaggaagacaacact
gggaaataccccgacatcatcagccgcatacccaagatcaaactcccgtccgttacgtcc
ttcatcctggacgccgaagctgtggcctgggaccgtgaaaagaagcagatccagccgttc
caagtgctcaccacccgtaaacgcaaggaggtggatgccgcggagatccaggtgcaggtg
tgtctgtacgcctttgacctcatctacctcaatggagagtccctggtgcgtgagcccctc
tcccgacgccggcagctgctgcgggagaactttgtggagacagagggtgagttcgtcttc
gccacctccctggataccaaggacacggaccagatcgccgagttcctggagcagtcagtg
agagactcctgcgaggggctgatggtgaagaccctggatgtcgatgccacctacgagatt
gccaagaggtcgcacaactggctcaagctgaagaaggactacctggatggcgtgggggac
acgctggaccttgtggtgatcggcgcctacctgggccggggcaagcgggccggtcgctac
gggggcttcctgctggccgcctacgacgaggacagcgaggagctgcaagctatatgcaag
ctgggaaccggctttagcgacgacgcgctgcaggagctccaccacggcctgcaggccctg
gtgctgcccagcccacgttcctatgtgcgggcggacggggccgtggcccccgaccactgg
ctggagcccagcgccgtgtgggaggtcaagtgcgccgacctttctctgtcccctatctac
cctgctgcccgtggcctggtggacagcgagaagggcatctccctgcgcttccctcggttc
atccgcgtccgtgaagacaagaagccagaggaggccaccaccagtgcccaggtggcctgt
ctgtacaggaagcagagtcaggttcagaaccagcaaggctcacagtcagactctgacccg
gaggatttctactag
DBGET
integrated database retrieval system
