KEGG   Rousettus aegyptiacus (Egyptian rousette): 107516030
Entry
107516030         CDS       T06036                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ray  Rousettus aegyptiacus (Egyptian rousette)
Pathway
ray03030  DNA replication
ray03410  Base excision repair
ray03420  Nucleotide excision repair
ray03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ray00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107516030 (LIG1)
   03410 Base excision repair
    107516030 (LIG1)
   03420 Nucleotide excision repair
    107516030 (LIG1)
   03430 Mismatch repair
    107516030 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ray03032]
    107516030 (LIG1)
   03400 DNA repair and recombination proteins [BR:ray03400]
    107516030 (LIG1)
Enzymes [BR:ray01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107516030 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     107516030 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107516030 (LIG1)
DNA replication proteins [BR:ray03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    107516030 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     107516030 (LIG1)
DNA repair and recombination proteins [BR:ray03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107516030 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     107516030 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     107516030 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DUF1685 PucR
Other DBs
NCBI-GeneID: 107516030
NCBI-ProteinID: XP_036087643
LinkDB
Position
Unknown
AA seq 904 aa
MQRSIMSFFYPKTEGKAKKPEEETPSGIRETEPPPKVALKERNGVVPESDSPVKRPGRKA
ARVLCSEGEEEEDGACTPPRGQKPAAALPRERSPALPSASPERASPPGIPKRRTARKQLP
KRTHEGEQSEDKDREAKRTKEEEAETPTESPSESEGAEEKEVEEGDLPTVPPELPEACKA
EPPAGSSSEPGAAVGHGLQDEDRAKPPARAPKTLSSFFAPRKLEVKTEAKEEGSGAPRKE
APKGPLEPSGYNPAQNNYHPVKDACWKQGQKVPYLAVARTFEKIEEVSARLRMVETLSNL
LRSVVALSPSDLLPILYLSLNHLGPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAE
KGDVGLVAENSRSTQRLMLPPPALTASGVFAKFQDIARLTGSTSTAKKIEIIKGLFVACR
HSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQGFPPAVVDAGKGKAAEARKTW
LEEQGMILKQTFCEVPDLDRVVPVLLEHGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVL
KRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTS
FILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPL
SRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVRDSCEGLMVKTLDVDATYEI
AKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEDSEELQAICK
LGTGFSDDALQELHHGLQALVLPSPRSYVRADGAVAPDHWLEPSAVWEVKCADLSLSPIY
PAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVACLYRKQSQVQNQQGSQSDSDP
EDFY
NT seq 2715 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatcatgtcatttttctaccccaagacagagggcaaagcgaagaagcca
gaggaggagacgcccagcggcatcagagagacagagccccccccaaaggtggcgctgaag
gagaggaatggagtggtgcctgagagcgactctccggtgaagaggccggggaggaaggca
gcccgcgtcctgtgcagcgagggtgaggaggaggaggatggagcctgcacgcccccccgg
ggccagaagccggccgcggccttaccccgggagcgcagccccgccctgcccagcgcgtcg
ccggagcgggcctccccaccgggcatcccgaagcggcgcacagctcggaagcagcttcct
aaacggacacatgagggagagcagagcgaggacaaggacagagaagccaagaggacgaag
gaggaagaagcagagaccccaacagaaagtccctcagagtcagaaggggccgaagagaag
gaagtggaagagggggacctgcccacggtgccccccgagctccctgaggcctgcaaagca
gagcccccagcaggaagcagttcagagcccggggcagccgtgggccacgggctgcaggat
gaggaccgggcgaagcctcctgccagggctcccaagacgctcagcagtttcttcgccccc
cggaagctggaagtcaaaacagaagcgaaagaagaggggtctggcgccccaaggaaggag
gcacccaagggcccgctcgagccatccggctacaatcctgcccagaacaactaccatcct
gtcaaagacgcctgctggaagcagggccaaaaggtcccctatctggctgtggcccggacg
ttcgagaagatcgaggaggtttcggctcggctgcggatggtggagacgctgagcaacctg
ctgcgctccgtggtggccctgtcgccttccgacctcctccctatcctctacctcagcctc
aaccacctggggccgccccagcagggcctggagcttggcgttggggacggtgttcttctc
aaggcggtggcccaggccacaggtcggcagctcgagtccgtccgggctgaggcagctgag
aagggcgacgtgggcctggtggctgagaacagccgcagcacccagaggctcatgctgccc
ccgcctgccctcaccgcctccggggtctttgccaaattccaggacatcgcccggctcact
ggcagcacgtccacagccaagaagatagagatcatcaaaggcctcttcgttgcctgccgc
cactcggaagcccggttcatcgccagagccctgagcggacggctgcgcctcgggctggcg
gaacagtcggtgctggccgcgctcgcccaggccgtgagcctcacgccacccgggcaaggc
ttccccccggccgtggtggatgccgggaagggcaaggcggcagaggctaggaagacgtgg
ctggaggagcagggcatgatcctgaagcagacattctgcgaggtgcctgacctagaccgt
gtcgtccccgtgctgctggagcacggcctggagcggctcccagagcactgcaggctgagt
ccaggggtccccctgaagccaatgttggcccacccaacccggggtgtcagcgaggtcctg
aagcgctttgaggaggcagctttcacctgcgagtacaaatacgatgggcagagggcgcag
atccatgtcctggaaggcggggaggtgaagatcttcagcaggaatcaggaagacaacact
gggaaataccccgacatcatcagccgcatacccaagatcaaactcccgtccgttacgtcc
ttcatcctggacgccgaagctgtggcctgggaccgcgaaaagaagcagatccagccgttc
caagtgctcaccacccgtaaacgcaaggaggtggatgccgcggagatccaggtgcaggtg
tgtctgtacgcctttgacctcatctacctcaatggagagtccctggtgcgtgagcccctc
tcccgacgccggcagctgctgcgggagaactttgtggagacggagggtgagttcgtcttc
gccacctccctggacaccaaggacacggaccagatcgccgagttcctggagcagtcagtg
agagactcctgcgaggggctgatggtgaagaccctggatgtcgatgccacctacgagatc
gccaagaggtcgcacaactggctcaagctgaagaaggactacctggatggcgtgggggac
acgctggacctcgtggtgatcggcgcctacctgggccggggcaagcgggccggtcgctac
gggggcttcctgctggccgcctacgacgaggacagcgaggagctgcaagctatatgcaag
ctgggaaccggctttagcgacgacgcgctgcaggagctccaccacggcctgcaggccctg
gtgctgcccagcccacgttcctacgtgcgggcggacggggccgtggcccccgaccactgg
ctggagcccagcgccgtgtgggaggtcaagtgcgccgacctttctctgtcccctatctac
cctgctgcccgtggcctggtggacagcgagaagggcatctccctgcgcttccctcggttc
atccgcgtccgtgaagacaagaagccggaggaggccaccaccagtgcccaggtggcctgt
ctgtacaggaagcagagtcaggttcagaaccagcaaggctcacagtcagactctgacccg
gaggatttctactag

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