Rousettus aegyptiacus (Egyptian rousette): 107518550
Help
Entry
107518550 CDS
T06036
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ray
Rousettus aegyptiacus (Egyptian rousette)
Pathway
ray03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ray00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107518550 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ray03021
]
107518550 (PCF11)
03019 Messenger RNA biogenesis [BR:
ray03019
]
107518550 (PCF11)
Transcription machinery [BR:
ray03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107518550 (PCF11)
Messenger RNA biogenesis [BR:
ray03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107518550 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
107518550
NCBI-ProteinID:
XP_016015825
UniProt:
A0A7J8H5E0
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMVVKAPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQGHRKEFLMNTLNQSDIKTSKTILSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESTRVSDMSKRDPRLKKHLQDKTDSKDDDI
KEKRKTADKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDAITEEPEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLTPKAGKIRQSGVKQSHMEEFPPPSR
EERNAKRSTKQDIRDPRRIKKTEEERPQETASQHSMKSGTEPKENVENWQSSKSTKRWKS
GWEESKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDTDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPTPGSLRFDGSSGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGSFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNHLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPVPGGGMRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPG
PQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQRLDSVSFNQ
TGPFNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFD
EKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVPFGQGQQFLPVHPQNPGAFVQN
PSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPSPEEEEDQN
EDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNR
TEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQ
SVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDC
TPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDTPPACTEESIATSTEIKTEND
TVESV
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggacgagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaagttacgttct
acatgggatgaaatattcccattgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctaccccccaatgtgaacacatctagcatccat
gtgaatcctaaatttttaaataaatcgcccgaagagccttcaacacctggtacagtggtc
agttctcctagcatctccactcctccaattgttcctgatatacaaaagaatcttactcaa
gaacaactaataagacagcagttactggcaaaacaaaaacaattgttagaacttcagcag
aaaaagctggagcttgaactagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggaaacatccaacctaggtcctggatctgcaccatccaaattacatgtctcacaa
attccgcctatggtagttaaagctccccatcaggttcctgtgcaaccagagaagagccgg
ccaggtccatccttacaaattcaagatttgaaaggaactaaccgggatccccgtcttaat
aggatgagtcaacattcttctcatggaaaagatcaaggtcacagaaaagaatttttaatg
aacacattgaaccaatctgatattaagacaagtaaaactatactctctgaaaaactaaat
tcatccaaacaagaaaaaagtaaatcaggtgaaaaaataaccaagaaggaacttgaccaa
ttagactctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaggaatctgaaagcacacgggtgtctgatatgagcaag
agagatccaagattaaaaaaacatcttcaagataagactgatagcaaagatgatgatata
aaggagaagagaaaaactgcagataaaaaggataaagatgaacatatgaaatcatctgaa
cacagactggttggaagtagaaataaaatcattaatggcattgtacaaaaacaggatgcg
ataactgaagaaccagaaaaacagggcacaaaaccagggagatctagtactagaaagcga
tcaagatcacgatcacccaagtctcggtcaccaattattcattctccaaagagaagagat
aggcggtcacccaaacgaaggcaaaggagtatgtctccaaccttgacacccaaagctgga
aagattcgccaatcaggagttaagcagtcacatatggaagaatttccgccaccttccagg
gaagaaagaaatgctaagagaagtactaaacaggatattcgagatccaaggcgaataaaa
aagactgaagaggagcgaccacaagaaactgcaagtcagcattctatgaaatcaggcact
gaaccaaaggagaatgtagaaaattggcaaagttccaagtctaccaaaaggtggaaatct
ggttgggaagaaagtaaaagcttacaacagggtgatgaacatagcaaatctcctcatcta
aggcatagggaaagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aagagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagatacagataaaccatttgtagatggtcca
gcatcacgattcgcaggcctcgatacaaatcagcgacttacagctttagccgaagataga
ccattatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcatctggacaaatgggaggaggtggccctttgagatttgaaggacca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
acacctctgcggtttgaggggccaattgggcaagcaggaggaggaagttttcggtttgaa
ggttctcctggtctgaggtttgagggatctgcaggtggtctacgatttgaaggaccaggg
gggcagcctgtgggtggcctcaggtttgagggacatcgaggtcaacctgtgggtggtcta
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggt
cagcctgtaggtggacttagatttgaggggggtcatggcccatcaggggctgcaattagg
tttgatggacctcatggtcagccagcaggtgggatcagatttgagggccctttgctacag
cagggagttggaatgaggtttgaaggcccccatggtcagtcagtagcaggtctgaggttt
gaagggcaacataatcatcttggtgggaaccttaggtttgagggtccacatggtcaacca
ggggtcgggatcaggtttgaaggaccattagtccaacaaggaggtggaatgagatttgag
ggtcctgtaccaggaggtggcatgagaattgaagggcctctgggtcaaggtggtccaaga
tttgaaggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttgcca
agatttgatggattacatggtcagccgggtcctaggtttgaaagaactggtcagccagga
ccacagaggtttgatggaccacctggacagcaggttcaaccaagatttgatggtgtgcct
caaagatttgatggtccacaacaccagcaagcttcaaggtttgatattcctcttggcctt
caaggtgcacgatttgacaatcatccttcacaaaggcttgactcagtttctttcaatcag
actggtccatttaatgatccacctggcaatgcttttaatgccccatcccaaggactgcag
ttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatgggccacat
ggccctggaaaccagagtttctcaaatccccttaacagagcttctggacactattttgat
gaaaagaatcttcagagttctcaatttggaaactttggcaatttacctgctccaataaca
gtaggaaatattcaggcatctcaacaggttctgactggcgttgctcagccagtaccattt
ggccaaggacaacaatttttaccagttcatccacaaaatccaggagcgtttgttcagaat
ccttcaggagcccttcctaaggcatatcctgataatcatctcagtcaggtggatgtaaat
gaattattttcaaaactgctaaaaacaggaattcttaaattgtcccaacctgattcagct
acaacacaagtaaatgaagttgctgctcagccttcccctgaagaggaggaagatcaaaat
gaagatcaagatgttccagatcttaccaattttacaattgaagaattgaaacaacgttat
gatagtgttataaatcgactttacactggtattcagtgttactcttgtggaatgaggttt
acaacatcacaaaccgatgtatatgcagatcatttggactggcattatcggcaaaataga
actgaaaaagatgttagcagaaaagtcactcatagacgttggtactacagtttaacagac
tggatagaatttgaggaaatagctgatctggaagaacgtgcaaaaagccagttttttgaa
aaggtgcatgaagaagttgtgctcaaaactcaggaggctgctaaagaaaaggagttccaa
agtgtacctgcggggccagctggagcagttgaaagttgtgaaatctgtcaagaacaattt
gaacaatactgggatgaagaagaggaagaatggcatttaaaaaatgctattagagtagat
ggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgt
acaccatctcccagcaagacaccagttgaaaaccccttgaacattatgttgaacattgtc
aaaaacgaattgcaggaaccctgtgaaagtcctaaagttaaggaagaacaaattgatact
ccaccagcttgtacagaggaaagcatagcaacatccactgaaattaaaacagaaaatgat
acagttgagtcagtttaa
DBGET
integrated database retrieval system
