Rossellomorea aquimaris: U9J35_00700
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Entry
U9J35_00700 CDS
T09670
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
raz
Rossellomorea aquimaris
Pathway
raz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
raz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U9J35_00700 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
raz03021
]
U9J35_00700 (rpoC)
03400 DNA repair and recombination proteins [BR:
raz03400
]
U9J35_00700 (rpoC)
Enzymes [BR:
raz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U9J35_00700 (rpoC)
Transcription machinery [BR:
raz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U9J35_00700 (rpoC)
DNA repair and recombination proteins [BR:
raz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U9J35_00700 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EF-hand_STIM1
Motif
Other DBs
NCBI-ProteinID:
WRP06742
LinkDB
All DBs
Position
134574..138173
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTEPGDTALERKQLLSEKEYRAYREKYGVKFQAAMGAEAIKKLLQ
DIDLDKEADFLKEELKTAQGQRRTRAIKRLEVVESFRNSGNDPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLEGVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERENAVGEGMIFNDANEVILAYQNGYVHLHTRIAIH
ASTINNKTFTEKQNKQLLLTTVGKVIFNEILPDTFPFINEPTRTNLEVATPENYFVDPST
DVKEVFQNRELINPFKKGFLGNIIAEVFKKFAITETSRMLDKMKDLGFKYSTKAGITVGI
ADIVVLAEKEEILIEAQSKVDNVLKQFKRGLITEDERYDRVISIWSAAKDTIQGKLMATL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVGSIKEGTEIIEPLE
ERLLGRYSRKTLRHPETDEIIITENQLITEDLAKTIIDAGVEHVSIRSAFTCHTRHGVCE
KCYGTNLATGQKVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEIDGVITSISEGKDRQYEITVQGDVETRSYTAPYTARLKFAVNDKVVR
GQEITEGSIDPKELLKVRDVSAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IDAGESEVLPGTLMDIHQFRDANEKALFGGKLPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRKAEPVLAEDTSEETVTVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaataatttcgagtatatgaaaattggtttagcttcccccgataagatc
cgttcgtggtctttcggggaggttaaaaaacctgaaacgattaactatcgtacattaaaa
ccagaaaaagatggtttgttctgtgaacgtatcttcggtcctacgaaggactgggaatgt
cattgtggaaaatacaagcgtgtacgttataaaggcgtcgtttgtgaccgctgtggtgtt
gaagtaacgaaggctaaagttcgtcgtgaacgtatgggtcacattgaactggctgcccct
gtatcccacatctggtacttcaaaggaattccaagccgtatgggacttgttttagacatg
tctccccgcgctttggaagaagttatttacttcgcttcctatgttgtaacagaaccgggt
gacacggctctggaaagaaagcaacttctttctgagaaagagtaccgtgcgtatcgtgag
aaatacggtgtgaagttccaagctgcaatgggagctgaagcgattaaaaagcttcttcaa
gacattgacctggataaagaagctgatttccttaaagaagaactgaaaacagctcagggt
caacgccgtacccgtgcaatcaaacgtttagaagtagtggaatctttcagaaactcagga
aatgatccggattggatgattcttgatgtactacctgtcattcctccagagcttcgcccg
atggttcagcttgacggtgggcgctttgcgacttctgacttaaatgatttatatcgccgt
gttattaaccgtaataaccgtctgaaacgtttattggaccttggtgctccaagtatcatc
gttcaaaacgagaagcgtatgcttcaagaagcggtcgacgctttaattgataatggccgt
cgcggacgtccagttactgggccgggtaaccgtccattaaaatccctttcacatatgctt
aaagggaagcaaggtcgtttccgtcagaaccttcttggtaaacgtgttgactattcaggt
cgttctgtaatcgtcgttggacctaaccttaagatgtatcaatgtggtcttcctaaagaa
atggctcttgagttattcaaaccatttgttatgaaggaacttgttgaaaagggattggct
cacaacattaagagtgcaaaacgcaagatcgaacgtgtacaacctgaagtatgggatgta
ttagaaggggttattaaagaacatccagttcttttaaaccgtgcacctactcttcacaga
cttggtattcaagcatttgaaccaactctagtcgaaggtagagcgatccgtcttcaccca
cttgtatgtactgcatacaacgcggattttgatggtgaccaaatggcggttcacgtacct
ctatcttctgaagcccaagctgaagcacgcatgctgatgcttgctgcacaaaacattctt
aatccgaaagacggtaagccagttgttactccgtcccaggatatggtattaggtaactat
tacctgacgcttgaacgtgaaaatgctgttggtgaaggtatgatcttcaatgatgcaaat
gaagtcatccttgcttaccaaaatggttatgtacatttgcatacccgtattgcgatccat
gcaagcaccatcaacaacaaaacgttcaccgagaagcaaaacaaacaattattgttaaca
acggtaggtaaagtaatctttaacgagatcttacctgatacattcccgttcattaacgaa
ccaacaagaacgaatttggaagtggctactcctgagaactactttgttgatccgtcaacg
gacgttaaagaagtattccaaaatcgtgagttaatcaacccattcaaaaaaggtttctta
gggaatatcattgcggaagtattcaagaagtttgctatcactgaaacgtctcgtatgctt
gataaaatgaaagacttaggattcaaatactctactaaagccggtattacggttggtatc
gcagatatcgtcgtactagcagaaaaagaagaaatcttaatcgaagcgcaaagtaaagta
gacaacgtattaaaacaatttaaacgtggtcttattacagaagatgaaagatacgatcgt
gtcatctcaatctggagtgctgcgaaagataccattcaaggtaaactaatggcgacactg
gataaacgcaacccaatcttcatgatgagtgattcaggtgcccgtggtaacgcatctaac
ttcactcagcttgctggtatgcgtggactgatggccaacccggctggtcgtatcattgag
ttaccgatcaaatcaagtttccgtgaaggtttaacggttcttgagtactttatctctaca
catggtgcccgtaaaggtcttgccgatacagcactgaaaactgctgactcaggttacctg
acacgtcgtcttgttgatgtggcacaggatgtaatcgttcgtgaagaagactgtggaacg
gacagaggcctacttgtaggatccattaaagagggtacagaaatcatcgagcctcttgaa
gaacgtttacttggtcgttattcacgtaaaacattacgtcaccctgagacagatgaaatc
atcatcactgaaaatcagttgatcacagaagacctggctaagacgatcattgatgctggt
gtcgaacatgtttcgatccgttctgctttcacatgtcacacgagacatggtgtttgtgag
aaatgttacggaacgaacctggcaacaggtcaaaaagtcgaagtaggggaagctgttggg
atcatcgctgctcaatccatcggggaaccgggtacccagttaacgatgcgtacgttccat
actggtggggttgcaggagacgatatcactcaaggtttaccgcgtatccaagaaatcttc
gaagcgcgtaatcctaaaggtcaagctgttatttctgaaatcgatggtgtaattacttcc
atcagtgaaggaaaagatcgtcagtacgaaattactgttcaaggtgatgtggaaacgaga
agttacacagctccttacacagcccgcttgaaattcgctgtgaatgataaagtagtacgc
ggtcaggaaatcactgaaggttcaatcgatcctaaagaacttcttaaagtgcgtgatgtg
tcagctgtacaagaatacttgctgcgtgaggtacaaaaagtataccgtatgcaaggggtt
gaaatcggcgacaaacacgttgaggttatggttcgtcaaatgttacgcaaggttcgtgtt
attgatgcaggtgaatctgaggtactgccaggtactcttatggacatccatcaattcaga
gatgcgaacgaaaaagctctatttggcggaaagcttccagcaacaggtcgtcctgtactg
ctcggaatcaccaaagcttcacttgaaacagattccttcttatcagcagcatcgttccag
gaaacaactcgtgtgttaacggacgctgccattaaaggaaaacgtgatgagttacttgga
ttgaaagaaaatgttatcatcggtaaattggttcctgccggtacaggtatgcaacgttac
cgcaaggcagagccggttttagcagaagatactagtgaagaaacagtaacagtagagtaa
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