Rossellomorea aquimaris: U9J35_05395
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Entry
U9J35_05395 CDS
T09670
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
raz
Rossellomorea aquimaris
Pathway
raz03420
Nucleotide excision repair
raz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
raz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U9J35_05395 (helD)
03430 Mismatch repair
U9J35_05395 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
raz03400
]
U9J35_05395 (helD)
Enzymes [BR:
raz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U9J35_05395 (helD)
DNA repair and recombination proteins [BR:
raz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U9J35_05395 (helD)
MMR (mismatch excision repair)
Other MMR factors
U9J35_05395 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PhoH
SLFN-g3_helicase
DEAD
AAA_30
NACHT
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WRP07605
LinkDB
All DBs
Position
1038063..1040390
Genome browser
AA seq
775 aa
AA seq
DB search
MNLEIRQEQERVDRVIETIVEQIGRLEDETGRRQDEVVEIRKHFWDEVKVNTDTFDDFLE
TVLSLRQQAQVLTVSQSTHKQAVKKLSALQRMKGKPYFGRIDFTEEGEATSEKVYIGIAT
LTDHSGEDFLIYDWRAPISSVYYDYPPGPAEYTTPGGIIRGTLEKKWQYLIRDGVIDSMF
DTSLTIGDEILQEVLGKRTDTHMNSIVATIQQKQNQIIRHDHGRLLIVQGAAGSGKTSAA
LQRIAYLLYKYRGSLKADQIILFSPNAMFNSYVSNVLPELGEENMEQVTFQEYLDHRLSK
EFELEGPYSQLEYVLTETGAPSYRTRTSSISFKASTDFFDIIKLYRTSLKESGMRFKGIK
FRGNPIITARQITERFYSNDTSLRFHNRLEKLTEWINQQIDEAEKIERSKPWVEEEIELM
SNEDYHKAHQHLQKKYSSNDYEIEYEALARLTVRRRFKGLRKAIERFQYVDVKGMYHQLF
ADPANISTLWSGEIPEEWEDICRSTVNMLEEGELSYEDATPFLLLKELILGFQTNTSIKH
VLIDEAQDYSPFQFEFIKRLFPSAKMTVLGDFNQAIFAHAREHVDFSTLTGLYGQNETNV
INLNQSYRSTKPIIEFTRRLVPGGDQISPFDRDGEKPVLTQVADHDELHRRIAAKIEEWL
DGDYHSIAVICKSAKESEAAYASLSGVEGIKLMKSASLEYEQGVIIIPAYLAKGIEFDAV
ILYDASARSYGDESLSRLFYTACTRAMHELHLFSVGEPSPFFEPIQADLYSSEPS
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgaaattcggcaggagcaggaacgtgtggaccgtgtcattgagacaattgtg
gagcaaatcggacgcctggaagatgaaacaggacggcgccaggacgaagtggtggagatt
cgcaaacacttctgggatgaggttaaggtgaatacggatacgttcgatgattttttggaa
acggtcctcagtttgaggcaacaggcacaagtgttgactgtcagtcaaagcactcacaag
caggcagtaaaaaagttatccgcgttacagcgcatgaagggaaagccttatttcggacgc
attgattttaccgaagaaggagaagcgacgtcggaaaaggtctatatcggcattgccacc
cttacggatcatagtggggaggatttcctgatctatgattggcgcgctccgatttcgagt
gtttactatgattatcctccaggtcctgcagaatacaccacacccgggggcataatcaga
gggacgctggagaaaaaatggcagtatctcatccgtgacggtgtcatcgactccatgttc
gataccagcctgacgattggggatgaaattttgcaggaggtgcttgggaagcggactgat
acccatatgaacagcatagtggctaccatccagcagaagcagaatcaaatcatcaggcac
gatcacggccggctcctcattgttcaaggtgcagctggcagcgggaaaacatcggccgcc
cttcagcgtattgcatatttactttataaatatcggggcagtctcaaggcggatcaaatc
attctgttttccccgaatgccatgttcaacagctatgtgtcgaacgtattgcctgagctt
ggtgaagagaatatggagcaagtgacctttcaggaatatttggaccatcgattgagtaag
gagttcgaattggagggaccatacagtcaattggaatacgtcctgactgaaacgggtgcc
ccctcgtaccggaccaggacgtcaagtatttccttcaaggcatcgacggatttctttgac
atcattaaattatacagaacgtcactgaaagaatccgggatgcgattcaaaggaattaag
tttcggggaaatccgatcatcacagcaagacaaatcacggaacggttttattccaatgat
acgtcactacgttttcataacaggctggagaaattgaccgagtggatcaatcaacagatt
gatgaagctgagaagattgaacggagcaagccttgggtagaagaagaaatcgagctgatg
agcaatgaggactatcacaaagcacatcagcacctgcagaagaaatattcttcgaatgat
tatgagatcgagtatgaggcgctggcccgattgactgttcgtaggagattcaagggactg
cgaaaagcgatcgagagatttcaatatgtggatgtgaagggaatgtatcatcagcttttt
gcggatccggcgaacatttccacattatggagcggggagatccctgaagagtgggaggat
atttgccgctcgactgtgaacatgctcgaagaaggggaactgtcctacgaggatgcgact
ccttttttattgttaaaagagctgattctcggctttcagaccaatacgtcgattaagcat
gtgctcatcgatgaagcacaggattactcaccttttcagttcgaattcatcaagcgtctg
tttccttcagctaaaatgaccgtgctcggcgactttaatcaggccatctttgcacatgca
cgtgagcacgtggatttcagcacactgaccggactttacggacagaatgaaaccaacgtg
atcaacctaaatcagagctaccggtcgaccaagccgatcatcgagttcacacgccggctt
gtgcctggaggagaccagatatccccatttgaccgtgacggggaaaaaccggtgcttacc
caggtcgctgatcacgatgaactccaccgccgaattgcagcgaaaatagaagaatggctg
gacggggattatcactccatagccgtcatatgtaaatctgcgaaagaaagtgaagccgca
tacgcctccttaagcggtgtggaaggcatcaagctcatgaaaagcgcctcccttgaatat
gaacaaggtgtaatcatcatccccgcctatctggcaaaaggaatcgaatttgacgccgtc
atcctctatgatgcgtccgcccgctcgtatggtgacgaaagcctcagccgcttattctac
acggcctgcacaagagccatgcacgaactgcacctattcagtgtaggcgaaccgagtcca
ttctttgagcctatacaagcggacctctatagtagcgaaccgtcttaa
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