Rossellomorea aquimaris: U9J35_11120
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Entry
U9J35_11120 CDS
T09670
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
raz
Rossellomorea aquimaris
Pathway
raz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
raz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U9J35_11120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raz03019
]
U9J35_11120
Messenger RNA biogenesis [BR:
raz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U9J35_11120
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
ODP
Lactamase_B_6
DUF5805
Motif
Other DBs
NCBI-ProteinID:
WRP08679
LinkDB
All DBs
Position
complement(2191034..2192707)
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AA seq
557 aa
AA seq
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MHTNEQALSIFALGGINEIGKNMYVIQHRDDIIIIDCGGKFPDESLLGIDLIIPDVTYLE
KNKDKIRGLIVTHGHEDHIGGIPYLLKKINMPIYATHFTLGLIELKLEEHRLIRETKLVT
IDSDSNLNLGTIDVSFFKVSHSIPDCLGIVFHTPEGNVVHTGDFKFDLTPANHQYSDIHK
MARIGDEGVLVLLSESTNAERGGLTPSEQMVGNHMDEAFLKATGKIFVSTFASNVNRVQQ
VVDASIKTNRRLALLGRSMINVVSVAMERGYLTVPDGMLIDAREIDALPPEKVAILCTGS
QGEPRAALGRLSTGSFRDVYVYPGDTVILAASPIPGNEKDVSRILDHLFQLGAHVIYGSG
STTGMHVSGHGYQEDLKLMLTLMKPTYFIPIHGEYRMLHHHRILAESVGVETGNTFIIKN
GEVVDFENSVARQTRTIPAGDTFVDGLSVGDIGSIVLRDRKQLSEDGMLIIVITLSKSEH
SIISGPDTISRGFIFVRNSEDLLKDVNHLVKKVVDELSAENIRDWKEMKQAIKKDVGQYL
FKHLKRKPMILPIIIEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgcataccaatgaacaggcattatccatttttgcacttggcgggatcaatgaaatcgga
aaaaacatgtatgtcattcaacaccgtgatgatattatcatcatcgattgtggaggtaag
tttcctgatgaaagtcttttgggaatcgacttaatcattcccgatgttacttaccttgaa
aaaaacaaagataaaatacggggattaatcgtcactcatggccacgaggaccacataggt
ggcattccatatcttctgaaaaagattaacatgcccatttatgcaacacatttcaccctg
ggactgatcgaactaaaattagaagagcacaggcttataagagagacgaaacttgtaacc
atcgactcggattccaacctgaatttaggaacgatcgatgtatcattcttcaaggtcagt
cacagcattccggattgtttaggtattgtatttcatacgccggaaggaaatgtcgtacat
actggagactttaagttcgatttaacacctgccaatcatcaatactcagatattcataaa
atggccaggatcggtgatgaaggggtattggtcttactttctgaaagcaccaatgcggag
cggggaggcttgaccccttctgaacaaatggtggggaatcatatggatgaagcgttcttg
aaagccactggaaaaatctttgtctcaacctttgcttcgaatgtcaaccgggtccaacag
gtagtcgatgcttccatcaagacaaacaggaggctggcattattaggaaggagcatgatc
aatgtagtttcagtcgccatggaacggggatatttaaccgtgcctgacggaatgctgatc
gatgcccgtgaaattgatgcattacctcccgaaaaggttgcaattttatgtacgggaagt
caaggggaacccagggctgcactgggtcgcctttcgactggaagcttccgggacgtatac
gtttatccaggcgatactgtcattctggctgcttcacctataccaggaaacgaaaaggat
gtatcacgtattctggatcatttatttcaactaggtgcccacgtgatttacggaagtgga
agtacaacagggatgcatgtatctggacacgggtatcaagaagacttaaaactcatgcta
acattaatgaagccgacttactttattcctatacatggtgaataccgaatgctgcatcat
cacagaatcctggctgaatcggtaggagtagaaacaggaaatacttttataataaaaaac
ggtgaagtcgtcgatttcgagaattccgttgcgcggcaaacgcgaaccattcctgcagga
gatacctttgtagatggcttgagcgtcggagatattggatcaattgtgttacgtgatcga
aaacagctttctgaagatggaatgcttatcattgtcattacccttagtaagtcggagcat
tcgattatttctgggcccgataccatatcacggggattcatttttgtacgaaactcagaa
gacctattaaaggacgtaaaccatctcgttaaaaaagttgtagatgaattgtctgcagaa
aacattcgcgactggaaagaaatgaaacaggcgatcaaaaaagacgtaggtcaataccta
ttcaagcatttgaagaggaaacctatgatattaccgattattattgaagtgtag
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