Rhodopirellula baltica: RB12047
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Entry
RB12047 CDS
T00134
Name
(GenBank) putative ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rba
Rhodopirellula baltica
Pathway
rba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB12047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rba03019
]
RB12047
Enzymes [BR:
rba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RB12047
Messenger RNA biogenesis [BR:
rba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RB12047
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
ERCC3_RAD25_C
Cas3-like_C_2
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
CAD77366
UniProt:
Q7UJ92
LinkDB
All DBs
Position
6497993..6499450
Genome browser
AA seq
485 aa
AA seq
DB search
MNKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPI
LQIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVI
FGGVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPD
VKRILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQ
ADKPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTLN
KFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFC
GGHETKFFIAIEREIKLQIPVATGLPGCQPRPLQDPESGDKASSRSGGRSGGGGQSGGGR
SRSGSGAQGGTGGGSKPGGRRRRGRAEGSVSGRGSTVGRKSAGSEAGKSGGSKNNRGRGG
RPASR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaaatttgaagatctggggctgactggccctttgctgcaaggcctcgagcaagcc
ggctacgaaactccgacccccatccaagctcaatccatccccgaaatcctcgacggcaac
gatgttctcggtgccgctcaaaccggcactggcaaaacggccgcgtttgctttaccgatc
ctgcagatcatgtgggaggacgaccaggaacgccgtgagccatccaagcgtcgtggtgga
cgtcccgggcgacgacccatccgcacgttggtgctttcgccaactcgtgagttgtccgcc
caaatcgaagcaaattttcgaatctacggcaaaaagacccggctacgcagcacggtcatt
ttcggaggtgtcaaccaaaacccgcaagttcgtgaattgcaatctggcgtcgacacgctg
gttgccacgcccggtcgattgttggatttggtcaaccaaggtttcatcgatttgaaggac
gttgaaatcctggttctcgacgaagctgatcacatgctcgacatggggtttctgcccgac
gtcaaacgcatcctgaagtttctgcctcgcgatcgacagaatctgctgttctcggcgacc
atgccgggacccattcgtaaactggccgacgaaattttggtcgatccagtcaccattcaa
atcgcaccgcagaagcccacggtcgaacgaattgaacaatcgatttgttttgtcgctcaa
gccgacaagccgcgattgctcaatcacttcatcgaaacgaaggccaccggttcaacgttg
gttttcactcgcaccaagcacggtgccgatgcggttgctaggcgattggttaaagccggt
gtgaaagccgcggcgattcacggcaacaagactcaagccaaccgtgttcggacgctgaac
aagttcaaaaacgatgaactcgatgttttggtggcaaccgatgtggccgctcgcgggatc
gacatcgatggcatccaaaccgtgatcaactacgacacgcccaacactcccgaagcctat
gttcaccggattggccggacggggcgggcgggacgcgaaggcgagacggtgatgttctgt
ggtggtcatgagaccaagttcttcatcgcgattgagcgagagatcaaactgcaaattccc
gtcgcgacggggttgcccggttgccaaccacggccgttgcaagatccggaatccggcgac
aaagcaagctcgcgttctggaggtcgctctggcggcggcggacaaagcggcggtggtcgc
tcgcgttctggctcgggagctcaaggtggtacgggtggaggatccaagcccggtggtcgt
cgccgtcgcgggcgagccgaaggcagcgtcagtggccgcggaagcacggtgggacgcaag
tcagccggcagcgaagctggcaagtccggcggttcgaagaacaatcgcggacgtggcgga
cgacccgcatcacgctga
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