Rhodopirellula baltica: RB4247
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Entry
RB4247 CDS
T00134
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rba
Rhodopirellula baltica
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rba03019
]
RB4247 (hrpA)
Enzymes [BR:
rba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RB4247 (hrpA)
Messenger RNA biogenesis [BR:
rba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RB4247 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
CAD73666
UniProt:
Q7USX6
LinkDB
All DBs
Position
2174799..2178953
Genome browser
AA seq
1384 aa
AA seq
DB search
MPDRWIHVNQKPSSPLKPHSPSLPSDAELPPVDLASTDPGPSDDGVAGTNRPVGATGPAD
PPIKIEYPSDLPITAHRDAIVDLLAENQVLVVCGETGSGKSTQLPKMLLDAGLGEHGMIG
HTQPRRLAARSIATRLAEETETKLGGAIGYQVRFGDQTSDRTKIKLMTDGILLAETRIDR
ELRNYSAIIIDEAHERSLNIDFLMGYLRQLIDRRPELKVIITSATIDAERFAEHFGTYSE
EAASDPENESNVIPAPILQVEGRGYPVELRYFPWEDIAGEDAEIDGRHYDLSRHVIGGLD
SLSRDGSGDTLVFLPTERDIREVSHHVAGHYKRMGLTNRVELLPLYARLPQSQQQAIFHP
SGNKRRIIFATNVAESSLTVPGIRYVIDSGTARISRYSARTKVQRLPVEAISRASANQRS
GRCGRVGPGICVRLYSAEDFETRDAFTTPEIRRTNLASVVLQSKTLRLGRLEEFPLIDPP
RAEAIREGMRTLHELGAIDEDKELTEIGWQLGRLPVDPRVGRILIAAKEMGVLPEVLPIA
AAMENPDPRDRPPEKRAAADEAHAAFKDPESDFLSLLRLWRFYDTMRSDHSRGKLTRILR
KNFLSPTRMREWSDVYRQLKEMSASIGENKRRSKNKSLTSRGSVGKIRYAELDPAKADQE
QPVVDSDKYALIHQALMTGLLSGIAMAGDKNEYTGAGGLKLFLWPGSGIFEAKPKWIVAA
ELVETAKQYARTCARIQPGWIEAVAPHLLKASYSDPHWSRKSGGAFCYQRQSLFGLPVVV
RRRVPLAPIDPATSRDLLIRHGLVENELPTTAKFVRHNRRLIESIEKLAAKTRRRDLVVD
DYSLLSFYASRLPEDVCDRPRLEKFDRQNPAPAWASKLNDDVALAAWLADPPATDSDDEH
SETTPYLRPQDILSVDSVAIAADAYPDEFAAGSSRLPLQYHFRPGAEDDGVHLTIHEAAL
PQVSDDALGWLVPGLLEPKVIAMIKSLPKRLRRNLVPAADVAARVVAEISDKRGQVPFMP
TLCEALTRHAEVRVVESDFQDEKLEPHLQFLVNVVDDTGNVIEKTRGVDAVKAKLGSRII
DDSEVAAAASGPEADWSREKMTSFDLDVLPREVVRKRGGVQVAQYPGLVDQGDSVSTKLF
SDEATAENATRLGMMRLFAIACRKDLRAQVRHLPALAEAKIKLAPIVSSAVIETALADLI
ARVALVESQPGRKMPVVRKRAEFDERIQMAPQRIGEATQDIAGWLGKLTDAYHSMRCQWE
ESSSPKMNDVRADVMQQIEWLVADQFIQWTPWQHLQHLPRYLSAIAYRLDKASSAASRDA
EGRQLIDRLWQRWLSGLPEDRRDPKSQCTSEFRWLIEELRVSQFAQPLGTAVKVSEKRCE
KLLS
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
ttgcccgatcgatggatccacgtgaatcagaaaccaagtagcccgctgaaaccgcacagt
ccctccctgcccagcgacgccgaacttccaccggtcgatctcgcatcaacggatcctgga
ccgagcgacgatggagttgctggcaccaatcgcccagtcggagcaaccggtccggccgat
ccgccgatcaaaatcgaatacccgagcgatttgccgatcacggcccatcgcgacgcgatt
gtggatctgctcgccgaaaaccaggtcctggtcgtgtgcggcgaaacgggcagcggcaaa
agcacgcagcttcccaagatgctgctcgatgccggtttgggtgagcacggcatgatcggt
cacacccaaccccgacgtttagccgctcgcagcatcgcgactcggttggcggaggaaacc
gaaaccaagctcggtggagcgatcggttatcaagttcgctttggagatcaaaccagcgat
cgcaccaagatcaaattgatgaccgacgggattctgctggcggaaactcgaatagatcgc
gagcttcgcaactacagcgcgatcatcatcgacgaagcccacgagcgttcgctcaacatt
gatttcttgatgggctaccttcggcaactgatcgaccgccgacctgaactgaaagtcatc
atcacatcggcgacgatcgacgctgaacgttttgccgaacactttggcacctattccgaa
gaagccgccagcgatccggaaaacgaatcgaacgtcattccggctccgattctgcaagtc
gaaggccgcggttacccagtcgaactgcgttactttccctgggaagacatcgccggcgaa
gacgctgagatcgacggtcgtcattacgatctttcgcgacacgtgatcggcggtctcgat
tcgctctcgcgagacggcagcggcgacacgctggtgttcctgcccaccgaacgcgacatt
cgcgaagtcagccaccacgtcgcgggccactacaaacggatggggctgaccaaccgagtc
gaactgttgccgctgtatgcccggctgcctcaatcacaacaacaagcgatctttcacccc
agcggcaacaaacgccggatcatttttgcaaccaacgtcgcggagtcatcgctgacggtt
cccgggatccgttacgtgatcgattcgggaacggctcgtatcagtcgctacagtgcgcga
acgaaggtccagcgtttacctgtcgaagcgatcagccgcgccagtgccaaccagcgttcg
ggccgttgcggacgggtcggccccggcatctgcgtgcgactctacagcgccgaagacttt
gaaactcgcgacgcgttcacgactcccgagatccgacgaacgaacctcgccagcgttgtg
ctgcagagcaaaacgttgcgtcttggtcgcctggaagagttcccgctgatcgatccaccc
cgtgccgaagccatccgcgaaggcatgcgaacgctgcacgaactgggggccatcgacgaa
gacaaagaactcacggagatcggctggcaactcggtcgcctgcccgttgacccgcgagtc
ggccgcatcctgatcgctgcgaaagaaatgggcgtgctgccggaagtccttccgatcgcc
gccgcgatggaaaatcccgatccgcgtgatcgtccgcctgagaagcgtgccgccgctgac
gaagctcatgcggcgttcaaagatcctgaaagtgacttcctttcgctgctacgactttgg
cgtttctacgacacgatgcgtagcgatcacagccgtggaaagctcacgcggatccttcgc
aagaactttttgtcacccacgcgaatgcgagagtggtcggacgtctatcgacaactcaaa
gagatgtcggcatcgatcggcgaaaacaaacgtcgatccaaaaacaaatcgttgacgtcc
cgcggatccgtcggaaagattcgctacgctgagctcgatccagccaaagccgaccaagaa
caaccggtcgttgattcggacaagtacgctctgattcatcaggcattgatgaccggcttg
ctgtccgggatcgccatggccggcgacaagaacgagtacaccggtgcgggcggactgaag
ttgttcctgtggcccggcagtggcatcttcgaagccaaacccaaatggatcgtcgccgcg
gaattggtcgaaacggccaagcaatacgctcgcacgtgtgcaaggatccaacctggatgg
atcgaggcggttgcgccgcacttgctgaaggcttcctacagcgatccacattggagtcgc
aaaagtggcggtgcgttctgctaccagcgtcaatcgttgttcggtttgcctgtcgtcgtc
cgccggcgagtccccctggcgcccatcgatccagcaacctcgcgggatttgttgattcgc
cacggattggtcgaaaacgaattgccgacgacggcgaagtttgtacggcacaaccgacgc
ttgatcgaatcaatcgaaaaactcgccgcgaaaacccgtcgacgcgacttggtggttgac
gattattccctgttgtcgttttacgcgtcgcgtttgcccgaggacgtttgcgatcgaccg
aggctggaaaagtttgaccgtcaaaacccagcaccagcctgggcatccaagctgaacgac
gacgtcgcgctggcggcctggttggccgatcctcccgccacggattccgatgacgagcat
tccgaaacgacgccctatctgcgtccacaagacatcctgtccgtcgattccgtcgcgatc
gccgctgacgcttaccccgatgagttcgccgccggttcgtcacgtttgccgcttcaatat
cactttcgtccaggagccgaggacgacggggttcacctgaccatccacgaagccgcgctc
ccgcaagtcagcgacgacgcgctgggatggttggttcccggactgttggaacccaaggtc
atcgcgatgatcaaatcgttgcccaaacggttgcgtcgcaacttggttcccgccgccgat
gtcgctgccagagtggtcgccgaaatttctgacaaacgagggcaagtcccgttcatgcca
acgctatgcgaagcgttgacgcgtcacgcggaagtccgagtggttgagtccgatttccaa
gacgaaaaacttgagcctcatctgcagttcctcgtcaacgtcgtcgacgacaccggcaac
gtcatcgagaagactcgtggggtcgacgcggtcaaagccaagcttggttcacgaatcatc
gacgactctgaagtcgccgcggcggccagcggtccggaagcggattggtcacgcgagaag
atgacatcgttcgatctggacgtgctgcctcgcgaggtcgtccgcaaacgcggcggcgtg
caagtcgcgcagtaccccggactggtcgatcaaggcgactcggtgtccaccaaattgttc
tccgacgaagcgaccgccgaaaacgccacgcgtctgggcatgatgcgactctttgcaatc
gcttgccgcaaagacctgcgagcccaggttcgccacttgcccgccctcgccgaagccaaa
atcaaattggcaccgattgtctcctcagccgtgattgaaacggcgctcgcggatctgatc
gctcgcgtggctttggtcgaaagtcaaccggggcggaagatgccggtggttcgaaagcga
gccgagtttgacgaacgcatccaaatggcaccccagcgaatcggagaagccacgcaagac
atcgctggatggctgggcaaattgaccgacgcgtaccactccatgcgttgccaatgggaa
gaatccagttcccccaaaatgaacgacgttcgagccgatgtcatgcaacaaatcgaatgg
ctcgtcgcggatcaattcattcagtggacaccatggcaacaccttcagcatctgccccga
tacttgagtgcgatcgcctaccgtttggacaaagcgtccagcgcagcatcacgagatgcg
gagggacggcagttgatcgatcggttgtggcaacgttggttgagtggtttgccggaagac
cgccgggacccgaaatcacaatgcaccagcgaatttcgctggttgatcgaggaacttcga
gtcagccaattcgctcagccactcggcacggcggtgaaagtctccgagaaacgctgcgaa
aagctgttaagctga
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integrated database retrieval system
