Rhodopirellula baltica: RB4375
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Entry
RB4375 CDS
T00134
Name
(GenBank) probable extracellular nuclease
Organism
rba
Rhodopirellula baltica
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta_helix
Dockerin_1
Calx-beta
Motif
Other DBs
NCBI-ProteinID:
CAD73746
UniProt:
Q7USQ0
LinkDB
All DBs
Position
complement(2242933..2252103)
Genome browser
AA seq
3056 aa
AA seq
DB search
MFGFRSARLLDNQSLDQHDTSHSEKELGKSRKLRGRRTKTRRATLNRLIGERLEERRVLA
AYVVDTALDVVAEDGMVSLREAIQASNSNIAINADTEAGSPTSTEIDSISFADGLSSILL
GSELEITESLRISLGDSSSQIVSGDNASRIFAINASGDDAVSVDLSGVTLRDGVAESGGA
IYVGSGQSLSLTNVTLTGNIATGDDADMGGGALANDGGNVTIDDSTIVGNIANGASGSGG
GILNLGTLTVSGGEISDNTANRAGGGIEATAGSSTTLTDVLMELNVAGPDESAAPGNGGA
LHISGDGNADISGGTIRDNTAAREGGGLWNNTGTMIVDGTILTGNVASGDAADDGGGAIF
NNGGTLTVSNATISGNAADGDLGSGGGIFSTDGAVTINLSQIGGAIPSEGNTANRAGGGI
EVIDGTVTLNFGTDVSNNFAGINGGGLHSTGAADVTSNLAIFGSNTAASEGGGLWNSSTG
TMTVNGGAITSNVASGDDASNGGGGLFNDGGTLNVIDAVIGFNIADGVSGSGGGILNDGG
SLAISGNTSVSNNRANRAGGGIEVTGGSTTSIADASISSNLAGVSPAVAAPGNGGGLHVG
DDGVVTITGGSVTDNEAVEGGGLWNSAAGSLTIDGTTISGNTAVEGGGVYNDEAAALSDQ
MFSMTFESLNGSGVSGTGMVIVQSPSETTRTVRVVIDAEGLQDLSGIPGAIHVAHVHGQF
AGNANLPILNQGDGPFFDGAGGAANGFPPVNSVAPSLANDDGRTIADGFLDFLEGRPQYG
PVVLNLTSTQMRDAGPNGSNPPDGVPPLSHFLALAGAGDIDAAALFPNGTEFNLDTTYTF
DLTNADEERQFNNLAPLGLREVVLHGQTVDTAISDAIDAAAMGTAPGGVDLGDGTSFRVT
APVAVALITPVSGSVTITDATITDNTAIGGDATEGGGGIHNSGSLSVSDSEINGNTASGA
AGSGGGIWNAGIASIQDSEISGNTANRAGGGIEATETSSTSLTDVNLDGNNVGVSPAVAS
PGNGGGLHVTGSGTVTISGGTVNDNVAASEGGGLWNGTGVMTVTNTTISGNTASGDDADN
GGGGLFNVGGNLIVTDSTVINNVADGASGSGGGILNQGTLTVSGSDISENTANRAGGAIE
VTAGSSTTLTDVSMDRNIAGPDGSASPGNGGALHVSGGGVVTITGGTVSNNIAASEGGGL
WNSVSGSLTVDGTLVSENSAPIGGGIFNDSGVDVTSQTFQTSLSALNDSGVSGTATVTVD
TSDPDNPSITVNINASGLVPNQPHIQHIHGRFASDLDTTGTIPGPFLGEGGVAIDSRTPD
AGDDANGDGFITVGEGIAGYGNVLLNLSSPRAPVPLEGNSPLADFNLADFPTADDGTIDF
SETYTFDLSDVDQARQYNNLLPMSLREIVLHGVNTDVDVDGDGSPDGYRVTGPAASGTLQ
AVGGTLSIVNAQITGNVASGDGGGIANESGHVSITDSSISGNVSGGDEPGEGGGGVFNDG
GVVTITDSDVIENTAMAGLGNGGGILNANGGTLVVRGGTISNNDASRAGGGVENAGNATF
FETEFDGNVTGINGGALHTSGPWTANFIDATITGNSAGAEGGGVWNSVSGTIALVGTNVE
GNLASGADADQGGGGIFNDGGTVSINSSTVNNNTADGTAGSGGGILNLGSMTITGSTISG
NMANRAGGGIEATDASSTSLTDVNLDGNNVGISPAVAAPGNGGGLHVTGSGTVTISGGTV
NNNVAASEGGGLWNGTGEMTVTGITISGNTASGDDADNGGGGLFNVGGTLSVIDATVTGN
FADGASGSGGGILNLGMLTVSGGEISDNTANRAGGGIEATAGSSTTLTDVLMELNVAGPD
GSAAPGNGGALHISGDGNADISGGTIRDNTAAREGGGLWNNTGTMTVDGTILTGNVASGD
AADDGGGAIFNNGGTLTVSNATISGNAADGVLGSGGGIFSADGAVTINLSQIGGAIPSEG
NTANRAGGGIEVIDGTVTLNFGTDVSNNFAGINGGGLHSTGAANVTSNLAIFGSNTAASE
GGGLWNSSTGTMTINGGAITSNVASGDDASNGGGGLFNDGGTLNVIDAVIGFNIADGASG
SGGGILNDGGTLTVSGNTTISNNTANRAGGGIEATSGTLNTISGTTISSNNAGVSPAVAS
PGNGGGIHIGGDGQLTISGGSVTDNSAALEGGGLWNGSGLMTINGTTISGNTALGEGADD
GGGGVFNNGGSIAITNGSIRDNVASGSAGSGGGLLNFGGLVEMTGTTITGNRANRAGGGI
ESTADSSTTLLNVSLNLNNAGVSPATAAPGNGGGFHVTGNGSVEITGGTVNGNVAASEGG
GLWNGTGTMTVDGTVIDGNVASGDDADNGGGGIFNVGGTLVISDATIRNNVADGVSGSGG
GIFNAGTATIDNTTISDNTANRAGGGLEAIGGSTTSFTGGSLIDNVAGPSGSAAPGNGGA
VHISNDGSVELTEVVVNGNTAASEGGGLWNSSTGTLVVTRSTISNNITIDGGGIFADGDG
GVVTVVNSTIAANSASNDGGGVLSEGGTVSLTSVTVADNSASQGGGISVEAGMLSLINSI
VSRNNASTNSNLLGAIADSGNNLVDVDAGLGTLGDFGGPTPTIPLLSGSAALDAGGLAGV
TTDQRGVSRPQGPGVDIGAFESDLAVPVAASLSIAADNAQRVEGDSGTTAFTFTVTRAEN
TIGTVTVDYSVVGSGDNPADSSDFGGTLPTGTVTFADGESTATITVNVSGDTQVESNESF
AVVLSNASDDTVISQADAEGVILNDDINERETRILVPTFVARPHLIPGDGIPTAIIFQAL
TDTTVTVTPISVTSLSETVRIVDADTLTVSTYQNGVATANLRAGELYAVIFEPLSSDRIF
SIRSSAGSDTLTNRAATNILQPTDTSADGETTALDALMVINELNRLNDAGGEPLLGSFVD
VNRDASVTALDALLVINHLNRMELSTNTASGEFNAPQVPFANSERNELLSDEVDEFFDSG
EVIGFEEPGRTIASSFAGSASTAAATLIGVDEAMTELNDEEDSSSMTTEIELLDAV
NT seq
9171 nt
NT seq
+upstream
nt +downstream
nt
atgttcggatttcgttctgcccgcttgctcgataatcaatcacttgatcagcacgacact
tctcattccgaaaaagaacttgggaaatctcggaaactgagaggacgcagaacgaaaaca
cgccgtgcaactctgaatcgattgatcggcgagcgtctcgaggagcgtcgtgttctggcg
gcctatgtcgtcgacactgctttggacgtcgtcgccgaagatggcatggtcagtctacga
gaggcgattcaggcgtcgaacagcaatattgcgatcaatgcggataccgaagccggtagt
cctacctcgaccgaaatcgacagcatcagctttgccgatggcttgagctcgattcttttg
ggcagcgaattggagatcaccgaatcgcttcggatctccttgggtgattcatccagccaa
atcgtgagtggcgacaatgcatcgcgaatatttgcgatcaacgcgtcaggggatgatgcg
gtgagcgtcgacctttccggggtgacgctgcgagatggagtggcggaatcgggcggtgcc
atctacgtcggatcggggcaatcactctcgctcaccaacgtcaccttgacggggaacatt
gcgactggtgatgacgctgacatgggcggcggtgcgttggccaatgatggcggaaacgtg
acgatcgatgattcaacgatcgtaggaaacatcgcaaacggtgcttcgggcagcggtggt
ggcatcctgaacctaggaacattgacagtttccggcggcgagatcagcgacaacacggca
aaccgtgcgggtggcgggatcgaagccaccgcaggtagcagcacaacgctgacggacgtg
ttgatggaactcaacgttgctggacctgatgaatcagccgcgccgggcaacggtggtgca
ctgcatatctctggtgatggcaacgcggatatctcgggcggaacgatacgcgacaacaca
gcggcccgcgaaggtggtggtctttggaacaacaccgggacgatgattgtcgacggaacg
atcctgaccggcaacgtggcctctggtgatgcggcggacgacggtggtggagcgatcttc
aataacggtggaacactgacggtcagcaatgcaacgatcagtggcaacgcggctgacggt
gatttgggaagtggcggcggtatcttcagcactgacggtgcggtgacgattaacttgagc
caaatcggtggtgcgattccatccgagggcaacactgctaatcgtgctggtggtggtatc
gaagtgatcgatgggacggtgacgttgaactttggaacggatgtttcgaacaacttcgct
ggcatcaacggtggcggattgcactcgaccggagcagccgatgtcacatcgaacttggcc
attttcggtagcaacacggcggcgagcgaaggcggagggttgtggaactcatcgaccgga
acgatgacggtcaacggcggggcgatcacatcgaacgtcgccagtggcgatgacgccagc
aacggcggcggcggtttgttcaacgacggcggcacgctgaacgtgatcgacgcggtcatc
ggattcaacatcgccgacggtgttagcgggagcggcggggggattctcaatgatggagga
tcactcgccatcagtggcaacacatccgtttccaacaaccgagccaatcgggctggtggc
gggatcgaggtgaccggcgggagcacaacttcgatcgccgacgcatcgatctcatctaac
ttggcgggggtatcacccgcggtcgcggcgcccggcaatggtggcggactgcatgttggt
gacgacggtgtcgttacgatcaccggtggttcggtcacagacaacgaggcggtcgaaggt
ggtggactttggaattcggctgcaggttcgctgacgatcgatgggaccacgatcagtgga
aacacggcggttgaagggggcggcgtttataacgacgaggcagcagctttgtcggatcag
atgttctcgatgacctttgagagtcttaatggctccggcgtttcgggaaccggcatggtg
atcgttcaatcgccatcggaaacaactcgcaccgttcgtgtcgtgatcgatgcggagggg
ctgcaagatttgtccggcattcccggggcaatacatgtcgctcacgttcacggtcaattc
gccggcaatgcaaacttgccgattctaaatcagggcgatggtccgttcttcgacggtgca
ggtggagcggccaatggctttccaccggtcaactcggtggctccatctttggccaatgac
gatggacgaacgatcgccgacggcttcttggatttcctggaaggacgtccgcagtacggg
ccagtcgttttgaatctgacatcgacccagatgcgagatgcaggaccaaacggttcgaat
ccacccgacggtgttcctccgttgtcgcacttcctcgctttggcgggtgctggtgacatc
gatgcggcggctctgttccccaatggaaccgagttcaatctcgacacgacctacacattc
gatttgacaaacgcggatgaagaacgccagttcaacaatctggcaccgcttggtcttcgc
gaagtcgtgctgcatgggcagacggttgacactgcgatctcggatgcaattgatgcagcg
gccatggggactgctccgggtggcgtggatctgggcgatgggacatcgtttcgcgtaacg
gctcccgttgccgttgcgttgatcactccggtcagtggcagcgtgacgatcaccgacgca
acgatcacggacaacaccgcgatcgggggcgatgcaaccgaaggtggtggcggaattcat
aacagcgggtcactgtcagtatcggacagcgagatcaacggaaacacagcatcgggtgct
gccggcagcggcggcgggatttggaatgcggggatcgcatcgattcaagacagtgagatt
tcaggcaacactgccaatcgagccggtggtggtatcgaggcaactgaaacgtcgtccact
tcgctgaccgatgtgaacttggatggaaacaacgttggcgtcagtcccgcagtggcatca
cctggcaacggaggtggcttgcacgtcactggttccggaacggtgacgatcagtggcggc
accgtgaacgacaacgttgctgcttccgaaggcggtggtttgtggaatggaaccggtgtg
atgaccgtgactaacaccacgatcagcggcaacacagcatcgggtgacgatgcggacaat
ggtggaggtggcttgttcaatgttggcggcaatctgatcgtcacggactccacggtcatc
aacaacgttgccgacggtgcatcgggcagcggcggcggcatcctgaaccaaggaacgctg
accgtttccggcagcgatatcagtgaaaacactgccaatcgtgctggcggagcgattgaa
gtgaccgctggatcctcgaccacgttgaccgatgtgtcgatggatcgaaatatcgccggg
ccagatggttcggcgtcgccgggtaatggtggagcgttgcacgtctccggtggtggtgtc
gtgacgatcaccggcgggacggtctcgaacaacatcgccgctagtgaaggcggtggactt
tggaatagcgtgtccgggagtttgactgttgacgggactttggtgagcgagaactccgca
ccgatcgggggcggtatcttcaatgacagcggtgtcgacgtgacatcgcaaacgttccaa
acttcactgagtgcactgaatgattctggcgtgagcggaacggcgacggtcactgtggat
accagcgaccccgacaatccgtcgatcacggttaacatcaatgcatctggtttggttccc
aatcaacctcacattcaacacatccacgggcggtttgcttcggacttggatacaaccgga
acgatcccgggacctttcttgggtgaaggcggggtcgcgatcgattctcgtacgccggac
gccggcgatgacgcgaacggggatggcttcatcacggttggcgaagggattgccggttac
ggcaatgtgctgctgaatttgtccagcccgcgtgcaccggttcctttggaagggaattca
ccgttggccgatttcaacttggctgacttccccacggctgatgatggcacaatcgacttc
agcgagacctacacgttcgacctgagtgatgtcgatcaagctcgtcagtacaacaatttg
ttgccgatgtcattgcgtgagattgtgctgcatggagtgaacacagacgtggatgttgac
ggggacggttcacccgatggttatcgagtcaccgggcccgccgcgtcggggacgttgcaa
gccgttggcggaacgctgtccatcgtgaatgcacagatcaccggcaacgtggcatcaggc
gatggtggcgggattgccaacgaaagcggacatgtttcgattacggactcaagcatttct
ggcaatgtcagtggtggcgacgaaccgggtgaaggtggcggaggtgtcttcaatgatgga
ggtgtcgtcacaatcaccgacagcgatgtgattgagaacaccgccatggcgggactcggg
aacggaggcgggatcctgaatgcgaacggcggaacgttggtggttcgtggtggaaccatt
tccaacaacgacgcgtctcgtgccggtggtggtgtcgagaacgctggcaacgcaacgttc
tttgaaactgaattcgacggcaatgtgaccggaatcaatggtggtgcactgcacacctcc
ggaccgtggacagccaatttcattgatgccacgattaccggcaactccgccggtgcagaa
ggcggaggcgtttggaatagtgtgtcgggaacgatcgctttggtcggaaccaacgtcgaa
ggcaacttggctagcggtgccgatgctgatcagggcggtggcggtatcttcaatgatggc
ggaaccgtatcaatcaattcgtccactgtgaacaacaacacggctgacggcactgccgga
agcggtggcggcattctgaacctcggttcgatgacaatcaccggttcaacaatcagcggc
aacatggccaaccgcgccggtggtggaatcgaagccaccgatgcatcctccacttcgttg
accgatgtcaatctggacggaaacaacgtcggtatcagtcccgcggtggcggcgcccggc
aacggaggtggtttgcacgtcaccggttccggaacggtgacgatcagtggcggcacggtg
aacaacaacgttgcggcatccgaaggtggtggtttgtggaacggtaccggtgagatgacc
gtgactggaatcacgatcagcggcaacacggcctccggtgatgatgccgataacggcggt
ggcggactgttcaatgtcggtggaacgttgagtgtcattgacgcaactgtcacaggaaac
tttgccgacggtgcttcgggcagcggcggtggcatcctgaacctgggaatgctgacggtt
tcgggcggcgagatcagcgacaacaccgcaaaccgtgcgggtggcgggatcgaagctacc
gcgggtagcagcacaacgctgacggatgtgttgatggaactcaacgttgccggacctgat
ggatctgccgcgccgggtaacggtggtgcactgcatatttcgggtgatggcaacgcggat
atctcgggcggaacgattcgcgataacacggcggcccgtgaaggcggcggtctttggaac
aacaccggaacgatgacggtcgacggaacgattctgaccggcaacgtggcctcgggtgac
gcggcggatgacggcggtggagcgatcttcaacaacggcggaacattgacggtcagcaat
gcgacaatcagtggcaacgcggctgacggtgttttgggaagtggcggcggtatcttcagt
gctgacggtgcggtgacgattaacttgagccagatcggtggggcgattccatccgagggc
aacacggccaatcgagctggaggtggcatcgaagtgatcgatgggacggtgacattaaac
tttggaacggatgtttcgaacaactttgccggcatcaacggtggcggattgcactcgacc
ggagcagccaacgtcacatcgaacttggccattttcggtagcaacacggcggcgagcgag
ggcggaggattatggaactcatcgaccggaacgatgacgatcaacggcggggcgatcaca
tcgaacgtcgccagtggcgatgacgccagcaacggtggcggcggtttattcaacgacggc
ggcacgctgaacgtgatcgacgcggtcatcggattcaacatcgccgacggtgccagcggc
agtggcggtgggattttgaatgatggcggaacgttgacggtgagtggaaacacgaccatt
tccaacaacaccgccaatcgtgctggcggcggcatcgaagcaacctctggcacgctgaac
acgatcagcggaaccacgatctcatcgaataacgccggtgtctctcctgctgtcgcttca
cctggaaatgggggcggtattcatatcggtggtgatgggcagctaacgatcagtggtgga
tctgtcaccgacaattccgctgctctcgaaggtggcggactttggaacggtagcggattg
atgacgatcaatggcaccactatctcaggcaacaccgcgttgggtgaaggagcagacgat
ggtggcggtggcgtcttcaacaacggtggctcgatcgcaatcaccaatggatcgattcgt
gataacgttgccagtggatcggcgggaagcggcggcggactgttgaattttggtggtttg
gtggaaatgaccggaacaacgattaccggcaatcgcgccaaccgagctggcggagggatc
gagtcgaccgcggattcgtcgacaaccttgctgaacgtttcgctaaatctgaacaacgcc
ggtgtttcgccggcgacggcggcacctggaaacggtggtggttttcacgtcaccggaaat
ggttcggtggagatcactggcggaacggtcaacgggaatgtcgctgcttccgaaggtggc
ggactttggaatgggaccggaacgatgacagtcgacgggacagtcatcgacgggaatgtc
gcgtcgggtgatgacgcggataatggagggggaggcattttcaatgtcggtggaacgctg
gtgatcagcgacgcgaccattcgaaacaacgttgccgatggtgtgtctggaagtggtggc
ggcattttcaatgctggaactgcaacgatcgacaacacaacaatctcagacaacactgcc
aatcgtgctggcggtgggttggaagccatcggcggatcgaccacttcgttcaccggtgga
tcgcttatagacaacgtggctggcccaagcggttccgcggcacccggtaacggaggcgcg
gttcacatttcaaacgatggttccgttgagctgacggaagttgtcgttaatgggaacacg
gccgccagtgaaggcggtggtctgtggaacagctcgacgggaactctggtcgtcacccgt
tcgacgatttccaacaacatcacaatcgacggcggcggcatctttgctgacggagatggt
ggtgtggtcaccgttgttaattcaaccatcgcggcaaactcggcgtcgaatgatggtggc
ggtgttttgagcgaaggtggaaccgtttcgttgactagtgtcacagtcgctgacaattca
gcttcacagggtgggggcatttcggtcgaggcgggcatgttatcgttaatcaattcgatt
gtttcgcggaacaacgcctcaaccaattcgaatctattgggggcaattgccgatagcgga
aacaaccttgtcgatgtcgacgcaggtcttggaacactgggcgactttggtggtccaact
ccaacgattcctttgctctcgggaagcgcggctttggatgcgggaggtttggccggggtg
acaaccgatcaacggggtgtttcgcgaccgcaaggtccaggcgtcgacatcggtgcgttc
gaatcagatttggcggtaccagttgcggcttcgttgagcatcgctgctgacaacgctcaa
cgcgttgaaggtgactcaggaaccaccgcgttcacgttcaccgtgactcgagcagaaaat
acgattggaaccgtcacggtggactattcggtggtcgggagcggagacaatccagcagat
tcgagtgactttggtgggacgttgccgaccggaacagtgacattcgccgatggtgaatcg
acggcgacgatcaccgtgaacgtatcaggtgatactcaagtcgaatccaacgaaagcttc
gctgtcgtgctgagtaacgccagcgatgacacggtgatttcgcaagcggatgcggagggt
gtcattctcaacgatgatatcaacgaacgtgagacgcgaattttggttccgacctttgtg
gctcgtccgcatttgattccaggtgatggcattccaacggcaatcatcttccaagcgttg
acggacacaacggtcacggtcactccgattagtgtgaccagcttgagcgaaacggtgcgg
atcgtcgacgctgatacgttgacagtcagcacctaccaaaacggagtcgcgacggcaaat
cttcgagctggcgaactgtacgcggtcatctttgaaccgctatcaagcgatcgtattttc
tcgattcgatcgtctgctggttcggatacgttgaccaatcgggcggcgacgaacattctt
cagccgacggacacatcggcggatggtgaaacaaccgctttggacgcgttgatggtgatc
aacgagctgaaccgtttgaacgatgccggtggtgaacccttgctgggtagcttcgttgat
gtcaatcgcgacgcgagcgttacggcactggatgcgttgcttgtgatcaaccacctcaat
cgaatggagctgtcgaccaacactgcgtcgggtgagttcaatgcaccacaagtgccattt
gcgaactctgaacgcaatgagcttttgagcgatgaagtcgatgagttctttgacagcggc
gaggtcatcggttttgaagaaccaggacgcacgatcgcatcgtcattcgccggatcagcg
tcaaccgctgcagccacgctgatcggagtggacgaagcaatgacagaactcaatgacgag
gaagactcgtcatcaatgaccactgagatcgagttgttggacgctgtctaa
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integrated database retrieval system
