Rhodopirellula baltica: RB5414
Help
Entry
RB5414 CDS
T00134
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rba
Rhodopirellula baltica
Pathway
rba03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RB5414 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rba03021
]
RB5414 (rpoB)
03400 DNA repair and recombination proteins [BR:
rba03400
]
RB5414 (rpoB)
Enzymes [BR:
rba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RB5414 (rpoB)
Transcription machinery [BR:
rba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RB5414 (rpoB)
DNA repair and recombination proteins [BR:
rba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RB5414 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
CAD74221
UniProt:
Q7URW6
LinkDB
All DBs
Position
2794930..2798715
Genome browser
AA seq
1261 aa
AA seq
DB search
MGGFRAVLVFLFFPAKELPLTMATTTQRRLEPTSIRKFGTGLGQFDLPDLTALQTVSYAA
FLQEDAASNARKDHGLESVLREIFPIASYDGNTTLEYLYYELGKPRYTIQECRQLRLTYG
RPLRIWLRLNREEPIEEEVYLGDLPIMLGGGEFIINGAERVVVSQLHRSPGVDFVLEQDT
TTDRKLPSCRVIPERGSWIEVNVTKKDALTVRIDQSGKFAATMLLRAMDPKYSTDADLLS
AFYETGTIKVNGGKDATKIENKIAVDDVVYPSGHERAGEIIVEAGYKITTELSETICNAG
VTSVEAMDLPKVPLIFNTLADDNTASHEEALLRIYQRLRPGNPPQLEKARTLFQEKFYDD
NRYRLGKVGRFRLNRKLGLGVEETVMTLRPDDMIAAIRYLIDLFDADSGAEIDDIDHLGN
RRLRTIDELASEELRKGFLKLRRTVQERMSVKDAQDMTPRSLINPKSVSAAIDFFFGRGE
LSQVVDQTNPLSQLAHERRLSALGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIG
LISSLAIYAGVDDYGFLCTPFRKVIDGKISDETVWLRADEEGESYVAPADTEVKDGALVP
GPNMIARFRSDFEIVMPEQVSFMDVAPAQMVGVSAGLIPFLEHDDANRALMGSNMQRQAV
PLLVTEPPIVGTGMEREVAKNSAMVVRARRAGKVTYADATRIEIGSDHYPLKKYQGLNER
TCQNQKPLITVGDKVEKGQIIADGAATQKGELALGRNVLVGFMSFDGFNYEDAIIISEEL
VRNDTYTSIHIEDFDVEIRETKLGREEFTRDIPNVSEKALRNLDDTGIVQTGTYVKPGDI
LVGKVSPKSKTELTPEEKLLHAIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLGE
DERKAFERELKQHETEGNEEIASTFESLIRDMEEASGVKLKDSTGTPLADGQDPKFVAER
ATSFRLELVLEQIEDEEKRKAAEKVHQTQWQNVEQAIDERDRKLNSMKRGDELRSGVLQM
VKIYIATKRTISVGDKMAGRHGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNV
GQILETHLGWAGAKLGFQALTPIFDGASESEINDCLAEAGLPAHGKIRLTDGRTGEPMEQ
ETTVGYIYMLKLHHLVDDKVHARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGA
AYILQELLTVKSDDVEGRTKIYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLEKRP
I
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
gtgggcggattccgggctgtgttggtgtttttgttcttccccgcgaaggagctcccactc
acgatggcaactacgactcagcgtcgcctcgaacccacctcgattcgcaaattcggcacc
ggcttgggccagttcgatttgcccgacctgaccgccctgcaaacagtgtcctacgcggca
ttcttgcaagaagatgcggccagcaacgctcgcaaagatcacgggctggagtccgtactg
agggaaattttcccgatcgccagttacgacgggaatacgacgctggagtacctgtactac
gagctggggaaaccccgctacacaattcaggaatgccgtcagctgcgtttgacctatggt
cgtccgctgcgtatttggttgcgtctgaatcgcgaagagcccatcgaagaagaagtctat
ctgggcgacctgccaatcatgctgggcggtggtgaattcatcatcaacggtgctgagcgt
gttgtcgtgtcgcagttgcaccgcagtcccggtgtcgacttcgttctggaacaagacacc
acgaccgatcgcaagttgccatcgtgccgcgtgatcccagaacgcggctcgtggatcgaa
gtcaacgtgaccaagaaagatgcgttgacggtccgcattgaccaaagcggcaaatttgcc
gcgaccatgttgctgcgtgcaatggatcccaagtacagcaccgacgcagatttgttgtcg
gctttctacgaaaccggcaccatcaaggtgaacggtgggaaagacgcgaccaagatcgag
aacaagatcgccgtcgacgatgtggtttaccccagcggtcacgaacgtgccggcgaaatc
atcgtcgaagctggctacaagatcaccaccgaactttcggaaacgatctgcaacgctggc
gtgacttcggtcgaagcaatggacctgccaaaggtaccgttgatcttcaacacgcttgcc
gacgacaacaccgccagccacgaagaagcgttgctgcggatctatcagcgtttgcgtccc
ggcaacccgcctcagctggaaaaagctcgcacgctgttccaagaaaagttctacgacgac
aaccgttatcgattgggcaaagtcggccgtttccgcctgaaccgcaagttgggtctcggc
gtcgaagaaaccgtcatgacgttgcgtcctgacgacatgatcgctgccatccgttacctg
atcgacttgttcgacgcggacagcggtgcggagatcgacgacattgaccacttgggcaac
cgtcgtttgcgtaccatcgatgaactcgccagcgaagaactccgcaagggtttcttgaag
ctgcgtcgtacggttcaagaacgcatgagtgtcaaagacgctcaagacatgacgcctcgt
tctttgatcaaccccaagagcgtttcagcagcaatcgacttcttcttcggtcgtggcgaa
ctctctcaagtcgttgaccagacgaacccattgtcgcagttggcacacgaacgtcgcttg
tcggctctcggccctggtggtttgaaccggaaacgtgcgggcttcgaagttcgcgacgtg
cacatttcgcactacggtcgtatctgcccgattgagactcccgaaggtacgaacattggt
ctgatcagctcgttggcaatttatgctggcgtcgacgattacggattcctttgcacacct
ttccgcaaagtcatcgacggcaaaatcagcgacgaaaccgtttggttgcgtgccgatgag
gaaggcgaatcctacgttgcacctgctgacaccgaagtcaaagacggtgccctggttccc
ggccccaacatgatcgctcgtttccgcagtgacttcgagatcgtcatgccggagcaagtg
tccttcatggacgtggctcccgctcagatggtcggtgtctctgctggcttgattcctttc
ctggagcacgatgatgcaaaccgtgctttgatgggatcgaacatgcagcggcaagccgtg
ccattgttggtcaccgagccgccaattgtcggcaccgggatggaacgcgaagttgcaaag
aacagtgcgatggtcgtgcgtgctcgccgtgcgggcaaagtgacctacgcagatgcgact
cgtatcgaaatcggtagcgatcactacccactgaaaaagtaccaagggctcaacgaacga
acctgccaaaaccaaaagccactcatcacggttggtgacaaggtcgaaaaaggccaaatc
atcgccgacggtgcagccacccaaaaaggtgaactggctctcggacgaaacgtcttggtc
ggcttcatgtcgttcgacggattcaactacgaggatgcgatcatcatcagcgaagagctg
gtgcgaaatgacacgtacacctcgatccacatcgaagacttcgacgtcgaaattcgcgaa
accaaattgggtcgcgaagaattcacgcgagacatcccgaacgtatccgagaaagcactt
cgtaacttggacgacaccgggatcgttcaaacgggaacttacgtgaagccaggcgatatt
ctggtcggcaaggtttcaccaaagagcaagacggaactgacgccggaagaaaagctcctt
cacgcgattttcggtcgtgctggtgaagacgtgaagaacgattcgttggaagtgccatcg
ggcatcgaaggcatcgtcatcgacacgcagaagttcagccgccggatgagtctcggcgaa
gacgagcgaaaggcgttcgaacgcgaactgaagcaacacgaaaccgaaggcaatgaagaa
attgccagcacgtttgagtcgttgattcgtgacatggaagaggcttccggcgtcaagctg
aaagactcgaccggcacacctttggccgacggacaagatcctaagtttgttgctgaacgt
gcaaccagcttccgattggaactcgtcctcgagcaaatcgaagacgaagagaaacgcaaa
gctgccgagaaggttcaccaaactcaatggcaaaacgtcgagcaagccatcgacgagcgt
gatcgcaaactgaacagcatgaaacgcggcgatgaacttcgctcgggcgtgctgcagatg
gtcaagatctacatcgcgaccaagcgtacgatcagcgtcggtgacaagatggcgggacgt
cacggtaacaagggtgtgatcgccaagatcctgccgatcgaagacatgccgttcttgccg
gatggaactccaattcaaatcatgctcaacccgctgggagttcccagccggatgaacgtg
ggtcagattttggaaactcacctgggttgggcgggagccaagcttggattccaagcactc
acgccaatcttcgatggtgccagcgaatcggaaatcaatgactgcttggcggaagccggt
ttgccagctcacggtaagatccgtttgaccgatggtcgaaccggtgagccgatggagcag
gaaaccaccgtgggctacatctacatgctgaagcttcaccacttggttgacgacaaggtc
cacgcacgcagcaccggaccttactcgttgatcactcagcaacctcttggcggaaaggct
cgcttcggcggtcaacgcttcggagaaatggaagtttgggcactcgaagcatatggtgcc
gcttacattctccaggaactgctgacggtgaaatccgacgatgtcgaaggtcgaaccaag
atctatgaatcgatggtcaagggagaaaacactctcgaggccggcacacctgccagcttc
gacgtgttgaccaacgaaattcgtggtctggccctgaacatgcaactcgagaaacggccg
atctaa
DBGET
integrated database retrieval system
