Rhodopirellula baltica: RB5416
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Entry
RB5416 CDS
T00134
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rba
Rhodopirellula baltica
Pathway
rba03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RB5416 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rba03021
]
RB5416 (rpoC)
03400 DNA repair and recombination proteins [BR:
rba03400
]
RB5416 (rpoC)
Enzymes [BR:
rba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RB5416 (rpoC)
Transcription machinery [BR:
rba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RB5416 (rpoC)
DNA repair and recombination proteins [BR:
rba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RB5416 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
RnfC_N
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
CAD74223
UniProt:
Q7URW4
LinkDB
All DBs
Position
2798945..2803234
Genome browser
AA seq
1429 aa
AA seq
DB search
MSIGETSNYDRINDYASVRISLARPQDIKAWSFGEVKKPETINYRTYRPEKDGLFCERIF
GPEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKAMPS
RLGNLLAMKTSSLEKVIYFQDYVVTDPKDTDLEMLQLLTEEEYRAARQQYGSGSFQADMG
AEAVRDLLNKLDLVTLSDQLRVDLAETGSKQKKKDLINRLKIVESIRDSDNRPEWMVLDV
IPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEVIIRNEKRMLQQ
SVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPRL
KLHQCGLPKKIALELYQPFIIRRLKELGHADTIKSAKKMLERKDEEVWDILEQVITNHPV
LLNRAPTLHRMGIQAFEPTLVEGNAIHLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAH
TLMMSTNNVFAPSNGKPIMSPSQDIVMGCYFMTVEMPDQKGEGMTFSTYEEVDYALAQGI
VGLHTRIKLRLPKYQKLKTDDESGEYGAIIDTTPGRVRFNEMLPVGMDFYNRAMRSGDLA
KSISDCYQRLGRKATIHLLDDMMQTGFRESTRSGLSFATDDLVTPDTKLQFIKEAEKEVM
KHKKAYDRGLMTGKERYNQVLDAWTHAREAITADMMSAMENDIRPGGWYINPVFLMSHSG
ARGGIEQIRQLAGMRGLMAKPTGEIIETPIKANFREGLSVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADVAQNVVVTMHDCGTTQGITKGVVYRGEKVEVSLAESINGRVSLKSIV
NPVTDEVIVEANQMITPEIARNIEAMGLEKIQVRTPMSCDAPLGVCRCCYGMDMSTGSMV
EEGMAVGIIAAQSIGEPGTQLTMRTFHIGGSVSKQVEESDIKTSRDGEVRLTRMKAVTNA
EGRDIVLTRNGQIMLVDDRGREVESYDIPTGAMLMVKEGDKVTAGQVLCEWNPYSIPILS
EVTGKIRFEDVVEGETMRLDREASGNTRMTIIDHKGDLHPQLVIEDETGRPLHAQYLPER
ATISVKEGEEVIPGKVLAEMPRETGGVSDITGGLPRVTEIFEARKPKDPAVIAEVDGEVE
ILSERKRGKRTIIVRSESGIEREHLVPHGKHFLVHTGDIVKAGQALVDGALVPHDILRVT
GEEAVQQYLLHEIQQVYRSQRVEINDKHGEIIIARMLRKVKIENAGDTNLLPGSVMDRFH
FRKANQDLQKCIKIANPGDTDYTEGTIVPKEAFEQTNAEVEAMGGTPAKGKRCKSATAST
QLLGITKAAVQSNSFISAASFQETTKVLTEAALAGKVDKLVGLKENVILGHLIPAGTGFR
IFQESEVNYRREALEELSQAPVSALEESFPLLGGDGEPASTTSSTTEGE
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtccattggcgaaaccagcaactacgatcgcatcaacgattacgcctccgtccgtatc
tcgttggcgcgacctcaagacatcaaagcatggtcgttcggtgaggtcaaaaaacccgaa
acgatcaactatcgaacctaccgtcctgaaaaagacggtttgttctgcgaacgcatcttt
ggccctgagaaggactgggaatgtgcctgcggtaaataccgtggaatgaagtacaagggc
atgatctgcgaccgttgcggcgtgaaggtcacccacagccgcgtgcgtcgtaaacgcatg
ggccacatcgaactggccgctccggttgttcacatttggttcttcaaagccatgccatcg
cgactgggcaacttgctcgcgatgaaaaccagctcgctggaaaaggtcatctacttccag
gattacgtggtcacggatcccaaggacaccgacctggaaatgttgcaactcctcaccgaa
gaggaataccgcgccgcacgtcaacagtacggctcaggcagcttccaagccgacatgggt
gcggaagccgttcgcgatctgctgaacaaactcgacttggtcaccctgtccgatcaactg
cgcgttgacttggcggaaaccggcagcaagcaaaagaagaaagacctgatcaaccgactc
aagatcgtcgagtcgatccgcgacagcgacaaccgtcccgagtggatggtcctcgatgtc
attccggtcattcctcccgacttgcgtcctttggttctgctggacagcggaaacttcgcg
acctcggacttgaacgatctctatcgccggatcatcaaccgcaacaaccgtttgcgaaaa
ctggtcgacctgaacgcaccggaagtcatcattcgcaacgaaaagcgaatgctgcaacag
tccgtcgatgcgttgttcgataacaaccgttgcaagcgtcccgtgttgggatcgtcgaac
cgaccgctgaaatccttgaccgacatgatcaagggaaaacaaggacgtttccgcgaaaac
ctgcttggcaagcgagtcgattactccgcccgttcggtcatcgtggtcggtcctcgtttg
aaactgcaccagtgcggtttgccaaagaagatcgcgcttgaactgtaccaaccgttcatc
atccgtcgtctgaaagagctcggccacgctgacacgatcaagtcggccaagaagatgctc
gaacgaaaagacgaagaggtctgggatatcctcgagcaagtcatcacgaaccaccccgtg
ttgctcaaccgagcaccaacgttgcaccggatgggtatccaagctttcgaaccaaccttg
gtcgaaggcaacgcgatccacctgcacccgctggtttgcaaaggtttcaacgctgacttc
gacggcgaccagatggccgttcacttgccgctttcgatcgaagcccaagtggaagctcac
acgttgatgatgagcacgaacaacgtgttcgctccttcgaacggtaaacccatcatgagt
ccttcgcaggacatcgtcatgggttgctacttcatgaccgtcgagatgcccgatcaaaag
ggcgagggcatgacgttcagcacctacgaagaagtcgactacgcgttggctcagggcatc
gttggtctgcacacgcgaatcaagttgcgtttgccgaagtatcagaaactcaagaccgac
gacgagagtggcgaatacggcgcgatcatcgacacgactccgggtcgcgttcgcttcaac
gaaatgcttcccgtcgggatggatttctacaaccgcgccatgcgtagcggtgacttggcc
aaatcgatcagtgactgctaccagcgtctcggacgcaaagcaacgattcacttgctcgat
gacatgatgcagaccggattccgtgaatcaacccgcagcggtctgtcgttcgcgacggat
gacctggtgaccccggacaccaagctgcagttcatcaaggaagccgaaaaagaggtcatg
aagcacaagaaggcttatgaccgcggtctgatgacgggcaaggaacggtacaaccaagtt
ctcgatgcttggacccacgctcgcgaagccatcacggcagacatgatgtcggcgatggaa
aacgacatccggcccggcggttggtacatcaaccccgttttcttgatgtcgcactcgggt
gcacggggtggtattgagcaaattcgtcagctcgccggtatgcgtggtctgatggccaag
ccaaccggtgaaatcatcgaaacgcccatcaaggcaaacttccgcgaaggcctgtcggtg
ctcgagtacttctcgtccacacacggtgctcggaagggtctggccgatacggcgttgaag
acagccgactccggttacctgactcgtaaactcgccgacgtggctcagaacgttgtggtc
accatgcatgactgcggcaccacacagggcatcacgaagggtgtcgtttaccgtggtgaa
aaggtcgaagtttcactggccgaatcgatcaatggtcgtgtcagcctgaagtcgatcgtc
aacccggtcaccgacgaagtgattgtggaagcgaaccagatgatcactcccgagatcgca
cgcaacatcgaagcgatgggcttggaaaaaatccaagttcgcacgccaatgtcttgtgac
gcacctctgggtgtttgccgatgctgctacggcatggacatgtcgaccggatcgatggtc
gaagaaggcatggctgtcggtatcatcgccgcccaatcgattggtgagcccggtactcag
ttgacgatgcgtacgttccacatcggtggttcggtgagcaagcaagtcgaagagtcggac
atcaaaaccagccgtgatggtgaagttcgtttgacacgaatgaaagccgtgacgaacgcc
gaaggtcgcgacatcgtgttgacccggaacggccaaatcatgttggtcgatgatcgcggt
cgggaagtcgaatcgtatgacatcccaaccggtgccatgctgatggtcaaagaaggcgac
aaagtcaccgccggacaagtcctctgcgaatggaacccgtactcaattccgattttgtcg
gaagtcaccggtaagattcgcttcgaagatgttgtcgaaggcgaaacgatgcgtctggat
cgcgaagccagcggtaacacccggatgacaatcatcgaccacaagggtgacctgcacccg
cagttggtcatcgaagatgaaaccggtcgtccgcttcacgctcagtacttgcccgaacgt
gcaacgatctcggtcaaggaaggcgaagaagtcatccccggtaaggtccttgctgaaatg
cctcgtgaaacgggcggtgtttcggacatcaccggtggtctgcctcgtgtgaccgagatc
ttcgaagctcgtaagccaaaggatccagctgtgatcgcggaagtcgacggcgaagtcgaa
atcctcagcgaacgcaaacgtggcaagcgaacgattatcgtccgcagcgaatcaggaatc
gaacgcgaacacttggttcctcacgggaagcacttcttggtccacaccggcgacatcgtg
aaggctggtcaagcactggtggacggtgcgttggttcctcacgacatcttgcgtgtgacc
ggggaagaagccgttcagcaatacttgctgcacgaaatccaacaggtctatcgcagccag
cgtgtggaaatcaacgacaagcacggcgaaatcatcatcgctcgcatgcttcgcaaggtg
aagatcgagaacgccggcgacaccaacctgttgcccggtagcgtgatggaccgattccac
ttccgcaaagccaaccaggacttgcagaagtgcatcaagatcgccaacccaggtgacacg
gactacaccgaaggcacgatcgtgccaaaggaagcgttcgaacaaaccaacgccgaagtc
gaagcgatgggcggaacgccagccaagggcaaacgttgcaagagtgcaacggccagcacc
cagttgctcggtatcaccaaggccgccgttcagtcgaactcgttcatctcggcagcgtcg
ttccaagaaaccaccaaggtgctcaccgaagccgctttggcaggcaaggtcgacaagttg
gtcggtttgaaagagaacgtcatcttgggtcacttgattccagccggtaccggattccgc
atcttccaagagtcggaagtcaactaccgccgcgaagcactcgaagaactgtcgcaggca
cctgtctcggcactcgaagagtccttcccgttgctcggaggcgatggcgaacccgcctcg
accacatcgagcacgaccgaaggcgagtga
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integrated database retrieval system
