Rhodopirellula baltica: RB7317
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Entry
RB7317 CDS
T00134
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rba
Rhodopirellula baltica
Pathway
rba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB7317 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rba03019
]
RB7317 (deaD)
03009 Ribosome biogenesis [BR:
rba03009
]
RB7317 (deaD)
Enzymes [BR:
rba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RB7317 (deaD)
Messenger RNA biogenesis [BR:
rba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RB7317 (deaD)
Ribosome biogenesis [BR:
rba03009
]
Prokaryotic type
rRNA helicases
RB7317 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Peripla_BP_3
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAD75308
UniProt:
Q7UNV7
LinkDB
All DBs
Position
3893519..3894877
Genome browser
AA seq
452 aa
AA seq
DB search
MNRMRNQRPPRTGRGSRPARFEEPVDTIALLESVGPVETPPEMDSFDELDLSPIMRRAVK
DAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQLDSLEDCRDPQAIVI
VPTRELADQVAAEAERLARGVPTEIAVLSGGKNMNRQLRQLENGTQLVVGTPGRVHDHLQ
RGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLLLSATLPPVVRRLAESY
MHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESLLKREKPEQAIIFCRTKRGTDRL
HRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVATDVVGRGIDISTISHIVNF
DVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILTSIEQRINKLLIRDKMDGFESPA
EKAAAVAAAAPEPEKELRRTLNPMTRKRPRRR
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaacagaatgagaaatcaacgcccaccgcgtacaggacgcggatcacgaccagctcgc
ttcgaagaaccggtcgacacaattgctctgctagaatccgttggcccggtggaaacaccg
ccagaaatggattcctttgacgaattggatttgtcgccgatcatgcgtcgagcggtcaaa
gacgcgggcttcacaaccccgtcgccgattcaagccgcattgatcccacacgctttgaat
ggcaaagacgtgatcggccaggcacggacaggaaccggcaaaactgccgcgttcagcatc
ccgatcctcgagcagctcgattccctggaagattgtcgcgacccgcaagcgatcgtgatc
gtcccaactcgcgaattggctgaccaagtcgccgccgaagccgaaaggctcgcccgcggg
gttccgacggaaatcgcagtgctgtcgggcggcaaaaacatgaaccgccagcttcgccaa
ttggaaaatggcacccagctcgttgtcggcacccccggacgcgtgcacgatcacctgcaa
cgaggaacattgcgaaccaacaacgtgtggtgcgtggttctggacgaagccgaccgaatg
ctggacatcggattccggccgcaaatcgaacggatcatgcgaaagtgcccgcggaaccga
caaacattgctgctgtcggcaacgcttcctcccgtcgttcgccgcttggccgaaagctac
atgcacgaaccagtcgtgattgactgctgccgtgacgaaatggcggtcgacacgatcgag
caacggtatttcaccatcgcgcaagacgacaaagtcagattgctggaatcgcttctgaaa
cgcgaaaaacctgaacaagcgatcatcttctgccgaaccaaacgcggaacggatcgcctg
caccggaagctctctcacgaatacgggagcgcatgcggtgcgattcatggtgatttgcag
caacgcgaacgcgaccgagtccttcaaaaactccgtgacggcaacctgaaattcctcgtt
gcaacggacgtcgtgggacgcggaattgacatcagtacgatctcacacatcgtcaacttt
gatgtcccgcaagattgcgacgattacgttcaccgcgttggccgaaccggccgaatgggt
cgagacggtgtcgcgtacaccttcgtcgtccccggtgaaggcgacatcctgacgagcatt
gaacaacggatcaacaaattgctgattcgggacaaaatggacggttttgaatcgcccgcc
gagaaggctgcagcggttgccgcggcggcgcccgagcccgagaaagagctgcggcgcacc
ctcaatcctatgacacgaaaacgccctcgccggcgttga
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