Rhodopirellula baltica: RB7957
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Entry
RB7957 CDS
T00134
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rba
Rhodopirellula baltica
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rba03032
]
RB7957 (topA)
03400 DNA repair and recombination proteins [BR:
rba03400
]
RB7957 (topA)
Enzymes [BR:
rba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RB7957 (topA)
DNA replication proteins [BR:
rba03032
]
Prokaryotic type
DNA Topoisomerases
RB7957 (topA)
DNA repair and recombination proteins [BR:
rba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RB7957 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
GPAT_C
Motif
Other DBs
NCBI-ProteinID:
CAD75669
UniProt:
Q7UMV5
LinkDB
All DBs
Position
complement(4247111..4249921)
Genome browser
AA seq
936 aa
AA seq
DB search
MSDKPESRTSETPIFPPRIGSFLLMAKSTSKSLVIVESPAKARTISKFLGSGYQVEASVG
HVRDLPGGAKDIPKKFKKEPWAYLGVNVEKDFEPVYIVPADKKKQVDKLKAALKDADSLY
LATDEDREGEAISWHLFELLKPKVPVHRLVFHEITKEAIQHALEDPREIDDGLVRAQETR
RILDRLYGYDVSQLLWKKVGRGLSAGRVQSVAVRLIVQRERERIAFHDATYWDLEAIFTT
DNGDSLPAMLATVDGRKIPTGKDFDSTNGQLINPELLQMDEQQAKELKQKLEKENFRVAK
VEVKPFTERPKAPFTTSTLQQEANRKLGFTARRCMQAAQRLYENGYITYMRTDSTTLSKE
AINAARDLVRSEYGEKFLHDSVRVYKGKVKNAQEAHEAIRPAGTPFRVPGAVQNELDRDQ
FRLFELIWKRTVACQMADAKKQRISVTIEGGGTTFTASGTSILFEGFLRAYVEGSDDPEA
ELADKERLLPAVNENDGLSVATLDPKSHTTQPPSRFSEASLTRTLEEKGIGRPSTYASII
DTIQRRDYVYKKGNALVPSWTAFSVIRLMETHFEPLVDYDFTAQMEDFLDTISRQEAESL
QYLKRFYFGDETEPTGDEKAAIGLKPRLESKIEEIDPRVTAKFSLGIPTEGENREEVFVR
VGKYGPFLEQGERKAPILEGMAPDEMTLARAMELFEDAAREDEPLGVHPETGKPIYIKAG
RFGPYVQMGEKDDEEKKNASILKTIAVEDVDLEMACKLLSLPRDLGEHPEMKEPILAHDG
RYGPYVKCGKETRSLPADKSPLDVTFDEAIELLKQPKTRGRAAPKEPIKKFEKPSPVTEN
EIKILEGRFGPYATDGETNASIPRGTDPKEMTFESVLDLLAERAAKGPTKKKKKKKAVKK
KTAKKAAKKKTAKKKAAKKKTAKAAAKKKGIIKKSS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacaaacccgagtcacgcacttctgaaacccccatctttccacctcgaatcggt
tcgttcttgctcatggccaaatcgaccagcaaaagtttggtgatcgtcgaatcgcccgcg
aaagcccggacgatctcgaagtttttgggaagcggttaccaggtcgaagccagcgttgga
cacgttcgggatttgccaggcggggccaaggatatccccaaaaagttcaagaaagaacct
tgggcgtacctcggagtgaacgtcgaaaaagacttcgagccggtttacatcgtgccggcg
gacaagaagaaacaagtcgacaaattgaaggccgcgctcaaggatgcagatagcctgtat
ctcgcgacggatgaagaccgcgagggagaagcgatcagctggcacctctttgagttgctg
aaaccgaaggtgcccgttcaccgtttggttttccacgagatcacaaaggaagcgatccaa
cacgcgttggaagaccctcgtgaaattgacgatggtttggttcgtgcacaggaaacccgc
cggattctggaccgtttgtacggttacgacgtttcccagttgctgtggaaaaaggttggg
cgtggtctatcggccggacgcgttcagagcgtcgcggttcgattgatcgttcaacgtgag
cgtgaacgaatcgccttccacgatgcgacctattgggatctggaagcgatctttacgacc
gacaatggcgactcgctgcccgccatgttggcgaccgtcgatggtcgaaaaattccaacc
gggaaggattttgattcgaccaacggccagttgatcaatcccgaactgttgcaaatggac
gagcaacaggccaaggaattgaagcagaagctcgaaaaggaaaacttccgcgtcgcgaag
gtggaagtcaaaccgttcaccgaacgccccaaggctcccttcacgaccagtacgttgcag
caggaagccaaccggaagctcggcttcaccgctcgtcgctgcatgcaagcggcccagcgg
ttgtacgaaaacggttacatcacctacatgcgtactgactcgaccacgttgtcgaaggaa
gccatcaacgcggctcgggatttggtacgcagtgagtacggcgagaaatttttgcacgac
tcggttcgagtctacaaaggcaaggtcaagaacgcgcaagaggctcacgaagcaattcga
cccgcgggtactccgttccgtgttcctggtgcggttcagaacgaattggaccgagaccaa
ttccgtttgttcgaactgatttggaagcgaaccgttgcgtgccagatggccgatgcaaaa
aagcaacgcatcagcgtcacgatcgaaggcggaggcaccacgttcaccgccagcggcacg
agcatcttgttcgaaggtttcttacgagcctatgtcgaaggcagcgacgatcccgaagcc
gaactcgcggacaaagagcgtttgcttccagcggtcaatgaaaacgatggtttgtcggtc
gcgactttggatcccaaaagccacaccactcagccaccatcgcgtttcagcgaagcatcg
ctaacgcggacattggaagagaaaggaattggtcgccccagtacctacgcgtcgatcatc
gatacgattcagcgtcgtgactacgtgtacaagaagggcaacgcgctcgtccccagttgg
acggcattcagtgtcattcgtttgatggagacccactttgagccattggtcgattacgac
ttcacggcccagatggaagatttcctggacacgatcagccgccaagaggctgagtccttg
caatatctcaaacgcttctatttcggtgacgaaacagaaccgaccggagacgagaaggct
gcgattggtttgaaacctcgtctggaaagcaagatcgaagaaatcgatccacgcgtcacg
gcgaagttctcgttggggattccaaccgaaggcgaaaaccgcgaagaggtttttgtacga
gtcggaaagtatgggccgttcttggaacaaggcgaacgcaaggctccgatccttgagggg
atggcacctgacgagatgactctcgcccgtgcgatggaattgttcgaggatgccgctcgc
gaagatgagcctttgggggttcacccggaaacaggcaaaccgatttacatcaaggccggt
cgtttcggtccgtacgtccaaatgggcgagaaggacgacgaagaaaagaagaacgcgtcg
atcctgaaaaccattgcggtcgaagacgtcgatttggaaatggcttgcaagctgctttcg
ttgccgcgggatctcggtgagcatccggaaatgaaagagcccattttggctcacgacgga
cgctatggtccgtacgtgaagtgtggcaaggaaactcgctccttgccggctgacaagtcg
cctttggatgtgacgtttgatgaggcgattgagttgctcaagcaacccaagactcgtgga
cgcgccgcaccgaaagaaccaatcaagaagttcgaaaagccaagcccggtcaccgagaac
gagatcaagattttggaaggacgctttggtccttatgcgactgacggcgaaaccaacgcg
tcgatcccacgcggcactgatccgaaagagatgactttcgaaagcgttctcgacttgtta
gcggaacgtgccgcgaaggggccgacgaagaagaaaaagaagaagaaggcggtcaagaaa
aagacggctaagaaggcggccaaaaagaaaacggcgaagaagaaggccgctaaaaagaaa
actgccaaagcagccgcgaagaagaaaggcatcatcaagaagtcgtcgtga
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