Rhodopirellula baltica: RB7959
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Entry
RB7959 CDS
T00134
Symbol
uvrA
Name
(GenBank) exinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
rba
Rhodopirellula baltica
Pathway
rba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RB7959 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rba03400
]
RB7959 (uvrA)
DNA repair and recombination proteins [BR:
rba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RB7959 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RB7959 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_29
AAA_21
nSTAND1
RsgA_GTPase
AAA_23
AAA_16
AAA_25
AAA_33
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CAD75670
UniProt:
Q7UMV4
LinkDB
All DBs
Position
complement(4249943..4256578)
Genome browser
AA seq
2211 aa
AA seq
DB search
MDKLQREIIVKGAREHNLRDVDLTLTRGELICFSGVSGSGKSSLAFDTLYAEGQRRYVES
LSNSARQFMGQMPKPDVDLVTGLSPSISISQKSTGNNPRSTVGTITEIYDFLRVLYARVG
TGHCPACDVEIAAQTTDVIVNRLLELASDGWQDEQSSEDSDTEAAIEDGTLWVMAPLVRG
QKGEFRDLFEDLRKQGFNRARVDGETFRLSDPPPLDRTRRHDVEVVIDRIVADQIERPRL
IEAVELALKLGESSLIASVGPPNGEDVPPVRHDQLFSSKYSCGNCGRSFRPPTPQLFSFN
SPQGMCASCDGIGRLYTFVPELLIPDESLSIRKGAIALLGKWGDLGRYRRHIYRGVADAM
DAELELEPGTMLETRWDKLPEIARHIWLWGADDSMQFTWRGGRKAKKYVGNFEGFIPELL
DRYRTSRNKMQLRQFEKYMNTMDCPDCHGKRLNDQACAVRISTGSKDFAESKSKSLPELC
ELSIDSLMEFFGDIPLSKTDTQIAGEALKEIRGRIGFLLGVGLEYLTLGRTAPTLSGGES
QRIRLAGQIGSGLSGVLYILDEPSIGLHPRDNDRLITTLTRLRDAGNTLIVVEHDEDTMR
AADTIVDFGPGPGVKGGHIVAAGSIDDLHRSKESVTGAFLSGARAITPSEKLRPVDSKKQ
LTIRGARFHNLKDIDVSIPLGVVTCVTGVSGSGKSSLIGGIVEPALRNALNGAEAEVGDH
DSIEGLEHLDKTIAIDQSPIGRTPRSNPATYVKVFDEVRNLFAKLPEAKARGYSVGRFSF
NVDGGRCAACDGNGATKLEMDFLADIWVTCPVCQGQRYNRETLSVQFKGKSIADVLNMDI
SEALDLFQNIPKIAEKLQTLVDVGLEYLKLGQPSPTLSGGEAQRIKLSRELSRRDTGSTL
YVLDEPTTGLHFADIDLLLGVINRLADRGNTIVIVEHNLDVIKTADWVIDIGVEGGAGGG
RVVGEGRPAEVAKVDDSYTGAALAEVLGIKRRQAKKRAQAIRDIVAPPAKSRTHVVVEGA
CEHNLKSVDLEIPRDAMTVFCGPSGSGKSSLAMDTIYAEGQRRYVESLSSYARQFIGQVQ
KPKAERIEGLSPAVALEQKNLGHSPRSTVGTVTEVYDYLRILYSKLGTMHCPDCSVPVGT
QTPDQIIDKVMGLPKGTRALLLAPIEVQSGEASLATWQSYRAMGYSRVRIDGETVELDDA
KALDPRRVHLVQIVVDRIKIAPEEQSRISDSVEQALSLGVGVLDVAIADSDQPERDWHVL
RHSQHLVCESCGRSFSQLTPHHFSFNSGIGWCPGCEGLGTQTGTNPAALMGTPQTTLAVG
AALLWPSVDHAVSRWMLRALSRTTGIPIHQPIDRLTVSQRRLLFHGLGPRWVEVRQGDTT
DEKSSSENEHAEEVRDHFGEGNVLFRFQFKGFYPALEEASRLTPGLRMRLEAFVAEIDCS
VCDGSRLRDDSAAVRFRDLTIGDLVHMPLDRLSEEVDSWDLDRRELKIAGELIREVQSRV
RFLRDVGLDYLTLHRGAPTLSGGEAQRIRLASQLGSGLCGVLYVLDEPTIGLHPRDNRRL
LAALHRLRDQGNTLLVVEHDHDVISGSDYLCDFGPRAGRHGGRVVAQGKPDAVEPADQSV
TAPYLLGDKQIELPAVRRPVLSESGKPMVEFLSVKGARENNLQDVDVDIPLGVLTAITGP
SGSGKSSLINDIVYPVLARRLHRAKVKPGQHDAIDGLRYVNKVIQVDQSPLGNSPSSNPA
TYTGVFDLIRGLFAELPAARERRFTPRTFSFNVSGGRCESCEGSGQRKIEMHFLPDVWVP
CDDCGARRYNEDVLEVKLHGQSIADVLEMPCGEAVELFASHPRIARVIQTLCDVGLDYVT
LGQSAPTLSGGEAQRVKLAAELARPATGHTIYLLDEPTTGLHFGDIEKLLVVMQRLVELG
NSVIVIEHNLDVIKCCDWLVDIGPGAGVHGGQVVFAGTPEGLAAKADPVNRESDEWVSAT
APFLADALAGTRTAQPREVLDWQPAVNGRVLESNSAAATTNEIAREPKAVLRVDSPEPIS
LLADDAEVETESDSANALLQPWRALGRRWHTLPKGFPENAPPQWPLELVEGLLDMLSNVA
GEGAVEYPAPDRVSVRLESGEEDVPLPHWAEVETKVSNCVRLKLSGPQSAIDLEQLLALD
VLQSRSDTGTLDLSDAERVTLTFHLTDVDHARSRKLKTFLKTHLDRTRSST
NT seq
6636 nt
NT seq
+upstream
nt +downstream
nt
gtggacaagttgcaacgggaaatcatcgtcaaaggcgctcgcgaacacaatttgcgcgac
gtcgatttgacgctcacgcgaggggagctgatttgtttctcgggtgtatcgggaagtggc
aagagttcgctcgcgtttgacacgctgtacgccgaggggcaacgtcgatacgtcgaaagc
ctgagcaattcggctcggcaattcatggggcagatgcccaaacccgatgtcgatctagtg
accgggctgagcccgtcgatctcaatcagccaaaagtcgaccggcaacaatcctcgcagt
accgtcggcacgatcacggagatctacgacttcttgcgagtcctgtacgctcgtgtcggc
acgggacactgtccggcatgtgacgtcgaaattgcggctcaaacgacggatgtcatcgtg
aaccgtctgttggaattggcatccgatggttggcaagacgagcaatcgtccgaagattcc
gataccgaagccgcgatcgaagacggcaccttgtgggtgatggctccgctggttcgcggc
caaaaaggtgaattccgtgatttgtttgaggaccttcgcaaacaaggtttcaaccgcgcc
cgagttgatggggaaacgttccggctgagcgaccctcctccgctggatcgaactcgccgt
cacgatgtggaagtcgtgatcgatcgaatcgtcgcggaccaaattgaacgaccgcgattg
atcgaggcggttgagttggcactgaagttgggcgagtcgtccttgatcgcttcggtgggg
ccgcccaacggagaggatgtgcctccggttcgccatgatcagctgttctcgtcgaagtac
tcgtgcggtaattgcggccgaagcttccggccaccgacgccccagttgttcagcttcaac
agcccacaggggatgtgtgcttcgtgcgacgggatcggccgtctgtacacgtttgtgccc
gagttattgatcccggatgagtcgctgtcgattcgcaaaggtgcgatcgcgttgctcggc
aaatggggagacctgggacgctatcggcgtcacatctatcgcggcgttgctgacgcgatg
gacgcggagttggaactcgaacccggcacgatgctggaaacccgctgggacaaattgccg
gagatcgctcgccacatttggttgtggggtgccgatgattcgatgcagttcacttggcga
ggcggacgcaaagcgaagaagtacgtcggcaattttgagggtttcattcccgagttgctc
gatcgctatcgaaccagtcgcaacaagatgcagttgcgtcagttcgaaaagtacatgaac
acgatggattgcccggattgtcatgggaagcgactgaacgatcaggcttgcgcggttcgt
atctcgacgggctcgaaagactttgccgaatcgaaaagcaaatcgctgccagaattgtgc
gagctctccattgattccttgatggagttcttcggcgacattccgctttcaaaaaccgac
acgcaaattgccggtgaggctcttaaagaaattcgcgggcgaattgggttcctgctcggt
gtgggtttggaatacttgacgctcggcagaacggctccaaccttgtccggcggtgaatcc
caacggattcgactggccggtcaaatcggatcgggtttgtcgggggtgctctatatcttg
gacgagccttcgatcggtttgcacccgcgtgacaacgatcgtttgatcacgacgttgacc
cgtttgcgagatgcgggcaacaccttgattgtggttgagcacgatgaagacaccatgcgt
gcggcggacacgatcgtggactttggtccggggcctggcgtcaaaggcggtcacatcgtg
gcggctggatcgatcgatgatctgcatcgatccaaggaaagcgttacgggagcgttcctg
tcgggggctcgtgcaatcacgccgagtgaaaagctacgtccggtcgattccaagaaacaa
ctcaccattcgtggggcgcggtttcataacttgaaggacatcgatgtttccattccgctg
ggcgtggtgacttgcgtgaccggggtttccggcagcggcaagagttcattgattggcggg
atcgttgaacccgctcttcgcaatgcgctcaacggggccgaagcggaagtcggcgatcat
gattccatcgagggtctggagcatctcgacaaaacgatcgcgatcgatcagtcgccgatt
ggccgtacgcctcgcagtaatcctgcgacctatgtgaaggtgttcgacgaggttcgcaac
ctgtttgcgaagttgccggaagcaaaggctcgtggttactcggttggtcgattcagtttt
aacgttgacggcgggcgatgcgccgcgtgcgatggaaacggtgcgaccaagttggagatg
gactttctggccgatatctgggtgacttgcccggtctgccaaggccaacgttacaatcgc
gaaacgttgtcggttcagttcaaaggcaagtcgatcgccgatgttctcaacatggatatt
tcggaggctttggatctgttccaaaacataccgaagatcgccgaaaagttgcagacgttg
gtcgacgtggggctggagtatttgaagctcggccagccatcgccgactctgtccggtggt
gaagctcaacgcatcaaactttcgcgagaattgagtcgacgcgataccggaagcacactg
tacgtgctggatgagccaacgaccggtttgcactttgccgacattgatttgttgctgggt
gtgatcaaccgtttggccgatcgtggcaataccattgtgattgtcgagcacaatctggac
gtgatcaaaaccgcggattgggtgatcgacatcggtgtcgagggcggtgccggtggcggt
cgagtggtcggcgaggggcgtcccgctgaggtcgcgaaagttgacgacagctacactggt
gctgcactcgccgaagtgctcggtatcaaacgacgacaggccaagaagcgtgcccaagcg
atccgcgacattgtggctcctccggctaagtcacggacccacgtcgtggtcgaaggtgct
tgcgagcacaacttgaagtcggtcgacttagaaatccctcgcgatgccatgactgtgttc
tgtggtcccagcggtagcggcaagagttcgctggcgatggacacgatttacgccgaaggt
cagcggcgttatgtcgagtcgttgtccagttacgcgagacaattcatcgggcaggttcaa
aagcccaaagcggaacgcatcgaaggcctgtctcccgcggtggcgctggagcaaaagaac
ctcggccattcgcctcgtagtaccgtcggtacggtcacggaggtttacgactacttgcgg
attttgtacagcaaactcggcacgatgcactgccctgattgttcggtgccggtgggaacg
caaacgcccgatcaaatcatcgacaaggtgatgggattgccaaagggcacacgagctttg
ttgctggcgccgatcgaggttcaatccggcgaagcatcgcttgcaacgtggcaaagctat
cgtgcgatgggctattcccgcgttcgtatcgatggtgaaacggtggaactggacgatgcg
aaagctctcgatcctcgacgggttcacttggtgcaaattgtcgtcgaccgaatcaagatc
gctccggaggaacagtcccggatcagcgatagcgtcgaacaagcgttgtcgctgggtgtc
ggtgtgttggatgtggcgatcgcggattcggaccaacccgaacgggattggcatgtgctt
cgacacagtcagcatttggtttgtgagtcctgcgggcgttcgttctcgcaattgaccccg
caccacttttcgttcaactctggcattggttggtgtcccggttgcgaaggattggggacg
cagacgggcacgaatccggctgctttgatgggaacgcctcagacaacgttggcagtcggt
gccgcattgctgtggccgtcggtcgatcacgcggtcagtcggtggatgttgcgggctctt
tctcgcaccacgggtatcccgatccatcaaccaattgatcggctgacggtgtcacagcgt
cgtcttttgttccacggtttggggccgcgttgggtcgaagttcggcaaggcgacacgacc
gatgaaaaatcatcttctgaaaatgaacacgccgaagaggtacgcgatcactttggtgaa
ggcaacgtgctgtttcggttccagttcaaagggttctaccccgcattggaggaagcgtct
cgtttgacgccgggattgcgaatgcgattggaagcgttcgtggccgaaattgattgctcg
gtttgtgacggttcgcgtttgcgagatgactcagcggccgttcgttttcgagatttgacg
atcggcgacttggtgcacatgccactggatcgattgtccgaagaagtcgattcttgggat
ctggatcgtcgcgaattgaagatcgcgggtgagctcattcgtgaagtccaatcgcgcgtt
cgattcttgcgagacgtgggactggactatctgaccttgcatcgcggtgcaccaaccttg
tcgggcggtgaagctcagcgaattcgtttggcatcgcaactcggcagtggattatgcggc
gtgttgtatgtgctggatgaaccgacgattggattgcacccgcgagacaaccgacgattg
ctcgcggcgctgcaccgactgcgagatcaaggcaacacgttgttggtggtggaacacgat
cacgatgtgatttcaggaagcgactatttgtgtgactttgggcctcgagccggtcgccac
ggtggtcgcgtcgtcgcacagggaaaacccgacgcggtggaaccagccgaccaatctgtc
acggcgccttacctattgggcgataaacagattgagttgcccgcggttcgccgtccggtg
ctctctgaatcgggcaagccgatggtggagtttttgtctgtcaaaggtgctcgtgagaac
aatcttcaagacgtggacgttgacattccgttgggcgttttgactgcgatcacgggcccc
agcggcagcggcaaaagctcgttgatcaacgacatcgtctatccggttttggccaggcgt
ctgcaccgggccaaagtgaaacccggtcagcacgatgcgatcgatggtctgcggtacgtc
aacaaggtcatccaggtcgatcaatcaccgctggggaattcacccagcagcaacccggcg
acctataccggcgtgtttgatttgattcgtgggctctttgcggaactgccagccgcgcgt
gaacgccgattcacgccgcgaacgtttagtttcaatgtgtctggtggtcgttgcgaatcg
tgtgaaggcagcggacaacgcaaaatcgagatgcacttcttgccagatgtttgggtgcct
tgcgacgattgtggtgcacgacgctacaacgaggatgtgctggaagtcaaactgcatggg
caatcgattgcggatgtgttggagatgccatgcggcgaagcggtcgagttgtttgcatcg
catccacgcatcgctcgcgtcattcaaacgctttgtgatgttggattggattacgtcacg
ctcggtcaatcggctccgactctttctggtggagaagcccagcgggtgaagttggcggcc
gagttggctcgtccagcaaccgggcacacgatttacttgttggacgagccaacaacgggt
ttgcatttcggtgacatcgaaaaattgctggttgtgatgcagcgtttggtcgagctcgga
aattccgtgatcgtgattgagcacaatttggacgtcatcaagtgctgcgattggttggtt
gacattgggcctggtgccggagtccatggtgggcaggtcgtctttgccggaaccccagaa
ggtttggctgcgaaggcggacccggtcaatcgcgaaagcgacgaatgggtttccgcgacc
gcgccgttcttggcggatgcactggcgggaacgcgaacggctcagccgcgtgaggtgcta
gattggcaacccgcagtgaacggccgagtgttggagtccaattccgctgcagcgacaacg
aacgagatcgcaagggaacccaaagccgttcttcgtgtggattcgcccgagccaatttcg
ttgctggcagacgatgcggaggtcgaaaccgaaagcgattcggcaaacgccttgctgcaa
ccttggcgagccttaggacgtcggtggcacacgttgccgaaaggttttcctgagaacgca
ccgcctcagtggccgctcgagctggtcgagggtttgctagatatgttgtcaaacgtcgcc
ggcgagggtgcggtcgagtaccctgccccggaccgcgtgtcggttcggctagaatcgggc
gaagaggacgttccgttgcctcactgggcggaagtcgaaaccaaggtgagcaattgtgtc
cggctgaaattgagcgggccgcaatccgcgatcgatttggagcaattgttggctttggat
gtgcttcaatctcgctccgacaccggcacgttggacctcagcgatgctgaacgcgtgacg
ctgacatttcatttgactgacgtggatcatgcacgcagtcgaaagctgaagacgttcttg
aaaacgcacttggatcggacgcggtcctcgacctga
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integrated database retrieval system
