Rhodopirellula baltica: RB8726
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Entry
RB8726 CDS
T00134
Symbol
recJ
Name
(GenBank) single-strand DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rba
Rhodopirellula baltica
Pathway
rba03410
Base excision repair
rba03430
Mismatch repair
rba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RB8726 (recJ)
03430 Mismatch repair
RB8726 (recJ)
03440 Homologous recombination
RB8726 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rba03400
]
RB8726 (recJ)
DNA repair and recombination proteins [BR:
rba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RB8726 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RB8726 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RB8726 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CAD75887
UniProt:
Q7UMM9
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All DBs
Position
4638505..4640304
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AA seq
599 aa
AA seq
DB search
MSTDSSSISDSNQLVDSGTKREWRITPHDAPLVEQLIRTTGLPPVVAQLLVSRGVYSQED
AATFLDTKLTSLRDPQLLPGVPAATEKILAAAEAKTPIVIYGDYDADGMTGSAILVNCLR
LIGAEVSYHVPNRLEEGYGLNEDSIRKLVARGKQMIISVDCGIASLQCAKLCRELGVTLI
ITDHHQIGDELPDADIIVHPRLPGTAYPFGELCGAGVAFKLAWSLCQAKCGQKKVTPPMK
RFLMQSLSLAAIGTIADVVPLLDENRVLVNHGLRVMQTEPLPGLWELMKLTKLDQASELT
TENISFGLAPRLNAAGRLGQAQLGIELLTIEAGDRAVALAQYIDQLNGTRDTLQRSVQLA
AQKQAKSDFDPENDPALVLAGVGWHTGVIGVVAGRLAEKYAKPVIILSLDTAGKVDATGS
GRVGGTGINLYEALRECEDRLVRYGGHPAAGGLTIRESDIEAFRGDFCEAVSKQWSEQEL
APAIQIDAEAPLGQLNLQTMKQIETMAPFGAGNPRPVLMGRDIELNEPAKKMGKGENHLS
VRLKQGERVIRGVAFGAADWCEPLNQHNGPIEIAYRPVINEFNGYRSVEVHLVDWRKQT
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaccgattccagctcgatttccgattccaaccagcttgttgattccgggacgaag
cgggaatggcggatcactccacacgacgccccgttggtcgaacaattgattcgcaccacg
gggttgcctccggtcgtcgctcagttgttggtcagtcgcggcgtttattcgcaagaagac
gccgcaacattcctggacaccaaactgaccagcctgcgtgacccgcagttgctgcccggc
gtgcctgccgcgacggaaaaaatcctggcggccgcagaagccaaaacgccgatcgtcatc
tacggcgattacgacgccgacgggatgaccgggtccgccatcctggtcaattgcctgcga
ctgatcggggctgaggtcagctaccacgtgcccaaccggctcgaagaaggttacggcctg
aacgaggactcgatccgcaaactggtcgctcgcggcaagcagatgatcatctcggtcgat
tgcggcatcgccagcctgcagtgcgccaaactctgtcgcgaacttggcgtgacgctgatc
atcaccgatcaccaccaaattggcgacgaactgcccgacgccgacatcatcgtccacccg
cgactgcccggaacggcttacccgtttggcgaactctgcggcgccggcgtggccttcaaa
ctcgcctggtcactgtgccaagccaaatgcgggcagaaaaaagtcacaccgccgatgaag
cgattcctgatgcaatcgctctcgctggccgccatcggaacgattgccgatgtggtcccg
ttgctggatgaaaaccgcgtgctggtcaatcacggcctgcgagtcatgcagactgaaccg
ctgccgggtttgtgggagctgatgaagctgaccaaactcgaccaagccagcgaattgacg
accgaaaacatctccttcggcctggctcctcggctcaacgccgccggacgactcggccaa
gcccaactgggaatcgaactgctgacgatcgaagccggcgaccgcgccgtcgctctggcc
caatacatcgaccagctcaacggaacccgcgacacgctgcagcgaagcgttcaactggcc
gcccaaaaacaagccaaatcagacttcgatcctgaaaacgatcctgcattggtcttggct
ggagttggctggcacaccggagtcatcggagtcgtcgccggacgactggccgagaaatac
gccaaacccgtgatcattctttcgctcgacaccgcgggcaaagtcgacgcgaccgggtcg
ggacgcgtcggcggcacaggcatcaacctctacgaagccctgcgagaatgcgaggaccga
ctggttcgctacggcggtcacccagccgcgggcggactgaccattcgcgaatccgacatc
gaagcctttcgaggtgacttctgcgaagcggtttcgaagcagtggtccgaacaggaactg
gcaccggcaattcagatcgatgcggaggctcccctcggtcaactgaacctgcaaacgatg
aagcaaatcgaaacgatggctccgtttggcgccggcaacccgcgtccggtgttgatgggc
cgcgacatcgagctcaacgaaccggccaagaagatgggcaagggcgagaaccacctgtcc
gtgcgtctgaaacaaggcgaacgcgtcattcgcggggtcgccttcggtgccgcggattgg
tgcgaaccgctgaaccaacacaacggcccgatcgagatcgcctaccggcccgtcatcaac
gagttcaacggttatcgcagtgtcgaagttcacttggtggactggcgaaaacaaacctga
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